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# Source code for samsifter.models.filter

    # -*- coding: utf-8 -*-
    """
    Abstraction of filters and other tools usable in POSIX pipelines.

    .. moduleauthor:: Florian Aldehoff <faldehoff@student.uni-tuebingen.de>
    """

    """ Qt4 libraries """
    from PyQt4.QtGui import QStandardItem, QIcon

    """ custom libraries """
    from samsifter.gui.widgets import FilterWidget
    from samsifter.resources import resources  #@UnusedImport

    SUPPORTED_FORMATS = ('SAM', 'BAM', 'any', 'as_input')
    SUPPORTED_SORTINGS = ('unsorted', 'queryname', 'coordinate', 'any', 'as_input')
    SUPPORTED_COMPRESSIONS = ('uncompressed', 'gzip', 'any', 'as_input')

    class FilterItem(QStandardItem):
        """Representation of filter tool in item-based views.

        This class can abstract any tool that takes line-based input from STDIN,
        logs messages to STDERR and writes output to STDOUT. It is used to
        represent this tool in item-based views by means of an icon and
        descriptive text.

        Each item has a list of parameters as well as input and output requirements
        in terms file format, sort order and compression.
        """
        # icon paths correspond to resource entries
        ICON_ANALYZER = ":/x-office-spreadsheet.png"
        ICON_CONVERTER = ":/applications-other.png"
        ICON_FILTER = ":/view-filter.png"
        ICON_SORTER = ":/view-sort-ascending.png"

        def __init__(self, text=None, desc=None, icon=ICON_FILTER):
            """Initialize new instance of a FilterItem.

            By default the new filter item both accepts and outputs only
            uncompressed SAM files ordered by queryname.

            Parameters
            ----------
            text : str
                Short label for tool, should not exceed one line.
            desc : str
                Longer description of tool, should explain basic functionality.
            icon : str
                Path to icon resource, defaults to filter icon.
            """
            if icon is None:
                super(FilterItem, self).__init__(text)
            else:
                super(FilterItem, self).__init__(QIcon(icon), text)
            self.desc = desc
            self.icon_path = icon
            self.command = "tester"
            self.input_format = 'SAM'
            self.input_sorting = 'queryname'
            self.input_compression = 'uncompressed'
            self.output_format = 'SAM'
            self.output_sorting = 'queryname'
            self.output_compression = 'uncompressed'
            self.parameters = []
            self.valid = True
            self.setEditable(False)

        def clone(self):
            """Creates new instance with identical settings.

            Returns
            -------
            FilterItem
                Exact clone of this filter item.
            """
            clone = FilterItem(self.text(), self.desc, self.icon_path)
            clone.set_command(self.command)
            clone.set_input_format(self.input_format)
            clone.set_input_sorting(self.input_sorting)
            clone.set_input_compression(self.input_compression)
            clone.set_output_format(self.output_format)
            clone.set_output_sorting(self.output_sorting)
            clone.set_output_compression(self.output_compression)
            for param in self.parameters:
                clone.add_parameter(param.clone())
            return clone

        def commandline(self, basenames=False):
            """Prints full bash command line for filter with all parameters.

            Parameters
            ----------
            basenames : bool
                Shorten file paths to filename only, defaults to False.

            Returns
            -------
            str
                Command to execute filter with all parameters.
            """
            cl = self.command
            for param in self.parameters:
                if param.is_active() or param.is_required():
                    cl += " " + param.cli(basenames)
            return cl

        def make_widget(self):
            """Creates a FilterWidget visualizing all parameters of this filter.

            Returns
            -------
            FilterWidget
                Qt4 widget visualizing all parameters of this filter.
            """
            return FilterWidget(self)

        def __str__(self):
            return self.text()

        def __repr__(self):
            rep = "\n%s" % self.text()
            rep += "\n- command:\t\t%s" % self.command
            rep += "\n- description:\t%s" % self.desc
            for param in self.parameters:
                rep += repr(param)
            return rep

        """ Getters & Setters """

        def add_parameter(self, parameter):
            """Append parameter to list of parameters.

            Parameters
            ----------
            parameter : FilterParameter
                Parameter to be added to this filter.
            """
            self.parameters.append(parameter)

        def get_parameters(self):
            return self.parameters

        def set_command(self, command):
            self.command = command

        def get_description(self):
            return self.desc

        def set_description(self, desc):
            self.desc = desc

        def get_icon_path(self):
            return self.icon_path

        def set_icon_path(self, icon_path):
            self.icon_path = icon_path

        def set_input_format(self, fileformat):
            if fileformat in SUPPORTED_FORMATS:
                self.input_format = fileformat

        def get_input_format(self):
            return self.input_format

        def set_output_format(self, fileformat):
            if fileformat in SUPPORTED_FORMATS:
                self.output_format = fileformat

        def get_output_format(self):
            return self.output_format

        def set_input_sorting(self, sorting):
            if sorting in SUPPORTED_SORTINGS:
                self.input_sorting = sorting

        def get_input_sorting(self):
            return self.input_sorting

        def set_output_sorting(self, sorting):
            if sorting in SUPPORTED_SORTINGS:
                self.output_sorting = sorting

        def get_output_sorting(self):
            return self.output_sorting

        def set_input_compression(self, compression):
            if compression in SUPPORTED_COMPRESSIONS:
                self.input_compression = compression

        def get_input_compression(self):
            return self.input_compression

        def set_output_compression(self, compression):
            if compression in SUPPORTED_COMPRESSIONS:
                self.output_compression = compression

        def get_output_compression(self):
            return self.output_compression

        def is_valid(self):
            return self.valid

        def set_valid(self, boolean):
            self.valid = boolean

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