.gitignore
LICENSE.txt
MANIFEST.in
Makefile
README.md
environment.yml
pyproject.toml
setup.py
.binder/requirements.txt
.build_tools/travis/install.sh
.build_tools/travis/test_script.sh
.github/workflows/build-html-and-deploy.yml
.github/workflows/test.yml
circhic/__init__.py
circhic/_base.py
circhic/setup.py
circhic/utils.py
circhic.egg-info/PKG-INFO
circhic.egg-info/SOURCES.txt
circhic.egg-info/dependency_links.txt
circhic.egg-info/top_level.txt
circhic/datasets/__init__.py
circhic/datasets/_base.py
circhic/datasets/setup.py
circhic/datasets/data/KBM7/HIC_076_50000_chr11.bed
circhic/datasets/data/KBM7/HIC_076_50000_chr11.matrix
circhic/datasets/data/KBM7/HIC_076_50000_chr14.bed
circhic/datasets/data/KBM7/HIC_076_50000_chr14.matrix
circhic/datasets/data/bsubtilis/SRX1014144_9790.matrix
circhic/datasets/data/bsubtilis/SRX1014144_9790_abs.bed
circhic/datasets/data/bsubtilis/SRX1014144_9790_iced.matrix
circhic/datasets/data/bsubtilis/SRX1014144_9790_iced.matrix.biases
circhic/datasets/data/ccrescentus/SRX263925_9958.matrix
circhic/datasets/data/ccrescentus/SRX263925_9958_abs.bed
circhic/datasets/data/ccrescentus/SRX263925_9958_iced.matrix
circhic/datasets/data/ccrescentus/SRX263925_9958_iced.matrix.biases
circhic/datasets/data/ecoli/SRX3451210_9897.matrix
circhic/datasets/data/ecoli/SRX3451210_9897_abs.bed
circhic/datasets/data/ecoli/SRX3451210_9897_iced.matrix
circhic/datasets/data/ecoli/SRX3451210_9897_iced.matrix.biases
circhic/datasets/tests/test_base.py
circhic/tests/test__base.py
circhic/tests/test_utils.py
doc/.gitignore
doc/Makefile
doc/conf.py
doc/index.rst
doc/install.rst
doc/make.bat
doc/principle.rst
doc/releasing.rst
doc/user_guide.rst
doc/_static/css/bootstrap.css
doc/_static/css/bootstrap.min.css
doc/_static/css/jhepc.css
doc/_static/js/bootstrap.js
doc/_static/js/bootstrap.min.js
doc/_static/js/jquery.js
doc/_static/js/jquery.maphilight.js
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doc/_static/logos/button_blue.png
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doc/_templates/class.rst
doc/_templates/function.rst
doc/_templates/modules.rst
doc/_templates/numpydoc_docstring.rst
doc/images/explicative_figure1.001_left.png
doc/images/explicative_figure1.001_right.png
doc/images/explicative_figure2.001_left.png
doc/images/explicative_figure2.001_right.png
doc/modules/classes.rst
doc/scripts/simple_plot.py
doc/scripts/simple_plot_colorbar.py
doc/scripts/simple_plot_colormap.py
doc/scripts/simple_plot_gdis.py
doc/scripts/simple_plot_range_val.py
doc/scripts/simple_plot_ticks.py
doc/themes/circhic/layout.html
doc/themes/circhic/logos
doc/themes/circhic/theme.conf
examples/README.txt
examples/biological/README.txt
examples/biological_ccrescentus/README.txt
examples/biological_ccrescentus/plot_ccres_mappability.py
examples/biological_ccrescentus/plot_ccres_mcid.py
examples/biological_ccrescentus/plot_ccres_second_diag.py
examples/biological_ccrescentus/plot_ccres_zraw_data.py
examples/biological_ecoli/README.txt
examples/biological_ecoli/plot_ecoli_macrodomain.py
examples/biological_kbm7/README.txt
examples/biological_kbm7/plot_kmb7.py
examples/schemas/README.txt
examples/schemas/plot_schemas_normal.py
examples/technical/README.txt
examples/technical_contact_map/README.txt
examples/technical_contact_map/plot_ccres_square_vs_circular.py
examples/technical_contact_map/plot_changing_colormap.py
examples/technical_contact_map/plot_circular_heatmap_size.py
examples/technical_contact_map/plot_colorbar.py
examples/technical_linear_chrom/README.txt
examples/technical_linear_chrom/plot_linear_chrom.py
examples/technical_simple_plots/README.txt
examples/technical_simple_plots/plot_bands.py
examples/technical_simple_plots/plot_bars.py
examples/technical_simple_plots/plot_lines.py