LICENSE.md
README.md
pyproject.toml
setup.py
selkit/__init__.py
selkit/__main__.py
selkit/cli.py
selkit/cli_registry.py
selkit/errors.py
selkit/version.py
selkit.egg-info/PKG-INFO
selkit.egg-info/SOURCES.txt
selkit.egg-info/dependency_links.txt
selkit.egg-info/entry_points.txt
selkit.egg-info/requires.txt
selkit.egg-info/top_level.txt
selkit/engine/__init__.py
selkit/engine/beb.py
selkit/engine/codon_model.py
selkit/engine/fit.py
selkit/engine/genetic_code.py
selkit/engine/likelihood.py
selkit/engine/optimize.py
selkit/engine/rate_matrix.py
selkit/io/__init__.py
selkit/io/alignment.py
selkit/io/config.py
selkit/io/results.py
selkit/io/tree.py
selkit/progress/__init__.py
selkit/progress/runner.py
selkit/services/__init__.py
selkit/services/validate.py
selkit/services/codeml/__init__.py
selkit/services/codeml/lrt.py
selkit/services/codeml/site_models.py