MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
bean/__init__.py
bean/annotate/__init__.py
bean/annotate/_supporting_fn.py
bean/annotate/filter_alleles.py
bean/annotate/translate_allele.py
bean/framework/AminoAcidEdit.py
bean/framework/Edit.py
bean/framework/ReporterScreen.py
bean/framework/__init__.py
bean/framework/allele_counts.py
bean/mapping/CRISPResso2Align.c
bean/mapping/CRISPResso2Align.pyx
bean/mapping/GuideEditCounter.py
bean/mapping/__init__.py
bean/mapping/_supporting_fn.py
bean/mapping/utils.py
bean/model/__init__.py
bean/model/model.py
bean/model/readwrite.py
bean/model/utils.py
bean/model/post_training/__init__.py
bean/model/post_training/compare.py
bean/model/post_training/post_training.py
bean/model/post_training/utils.py
bean/plotting/__init__.py
bean/plotting/allele_stats.py
bean/plotting/editing_patterns.py
bean/preprocessing/__init__.py
bean/preprocessing/data_class.py
bean/preprocessing/get_alpha0.py
bean/preprocessing/get_pi_alpha0.py
bean/preprocessing/utils.py
bean/qc/__init__.py
bean/qc/guide_qc.py
bean/qc/sample_qc.py
bean/utils/__init__.py
bean/utils/arithmetric.py
bean/utils/plot.py
beret_test/lib/python3.8/site-packages/numpy/__init__.cython-30.pxd
beret_test/lib/python3.8/site-packages/numpy/__init__.pxd
beret_test/lib/python3.8/site-packages/numpy/core/tests/examples/cython/checks.pyx
beret_test/lib/python3.8/site-packages/numpy/random/__init__.pxd
beret_test/lib/python3.8/site-packages/numpy/random/_bounded_integers.pxd
beret_test/lib/python3.8/site-packages/numpy/random/_common.pxd
beret_test/lib/python3.8/site-packages/numpy/random/bit_generator.pxd
beret_test/lib/python3.8/site-packages/numpy/random/c_distributions.pxd
beret_test/lib/python3.8/site-packages/numpy/random/_examples/cython/extending.pyx
beret_test/lib/python3.8/site-packages/numpy/random/_examples/cython/extending_distributions.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/algos.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/algos.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/arrays.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/arrays.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/dtypes.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/groupby.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/hashing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/hashtable.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/hashtable.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/index.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/indexing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/internals.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/interval.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/join.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/khash.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/lib.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/lib.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/missing.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/missing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/ops.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/ops_dispatch.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/parsers.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/properties.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/reduction.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/reshape.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/sparse.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/testing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslib.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/util.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/writers.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/base.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/base.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/ccalendar.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/ccalendar.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/conversion.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/conversion.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/dtypes.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/dtypes.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/fields.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/nattype.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/nattype.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/np_datetime.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/np_datetime.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/offsets.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/offsets.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/period.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/period.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/strptime.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timedeltas.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timedeltas.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timestamps.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timestamps.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timezones.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timezones.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/tzconversion.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/tzconversion.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/util.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/vectorized.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/window/aggregations.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/window/indexers.pyx
beret_test/lib/python3.8/site-packages/pandas/io/sas/sas.pyx
beret_test/lib/python3.8/site-packages/scipy/linalg.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize.pxd
beret_test/lib/python3.8/site-packages/scipy/special.pxd
beret_test/lib/python3.8/site-packages/scipy/linalg/cython_blas.pxd
beret_test/lib/python3.8/site-packages/scipy/linalg/cython_lapack.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/cython_optimize.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HConst.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/Highs.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsIO.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsInfo.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsLp.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsLpUtils.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsModelUtils.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsOptions.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsRuntimeOptions.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsStatus.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/SimplexConst.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/highs_c_api.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/cython_optimize/_zeros.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/cython_optimize/c_zeros.pxd
beret_test/lib/python3.8/site-packages/scipy/special/cython_special.pxd
beret_test/lib/python3.8/site-packages/scipy/stats/_biasedurn.pxd
beret_test/lib/python3.8/site-packages/scipy/stats/_unuran/unuran.pxd
bin/bean-count
bin/bean-count-samples
bin/bean-filter
bin/bean-qc
bin/bean-run
crispr_bean.egg-info/PKG-INFO
crispr_bean.egg-info/SOURCES.txt
crispr_bean.egg-info/dependency_links.txt
crispr_bean.egg-info/requires.txt
crispr_bean.egg-info/top_level.txt
tests/test_Edit.py
tests/test_count.py