Metadata-Version: 2.1
Name: korbinian
Version: 0.3.4
Summary: Bioinformatic sequence analysis of membrane proteins.
Home-page: https://github.com/teese/korbinian
Author: Mark Teese
Author-email: mark.teese@checkmytumhomepage.de
License: MIT
Download-URL: https://github.com/teese/korbinian/archive/0.3.4.tar.gz
Project-URL: Wiki, https://github.com/teese/korbinian/wiki
Project-URL: LangoschLab, http://cbp.wzw.tum.de/index.php?id=9
Project-URL: TU_Muenchen, https://www.tum.de
Project-URL: Freising, https://en.wikipedia.org/wiki/Freising
Project-URL: KorbinianSaint, https://en.wikipedia.org/wiki/Corbinian
Project-URL: KorbinianBeer, https://www.weihenstephaner.de/unsere-biere/korbinian
Description: korbinian
        =========
        
        Bioinformatic sequence analysis of membrane proteins.
        
        What is this repository for?
        ----------------------------
        
        * Parsing of UniProt flatfiles
        * Downloading homologues (primarily with SIMAP)
        * Parsing BLAST-like XML files
        * Analysis of protein sequences
        * Automated figure creation
        
        License
        -------
        
        * korbinian is released under the permissive MIT licence
        
        Credits
        -------
        
        * Mark Teese
        * Martin Ortner
        * Shenger Wang
        * Rimma Jenske
        * Enzo Torasso
        * Dominik Mueller
        
        Citation
        --------
        
        * scientific publication to be added
        * currently cited as "the korbinian python package (Mark Teese, Technical University of Munich)"
        
        Contact
        -------
        For contact details, see the image below. 
        
        
        Further contact details are available at my `staff page`__ within the `Langosch lab`__
        of the Technical University of Munich.
        
        .. _StaffPage: http://cbp.wzw.tum.de/index.php?id=49&L=1
        .. _LangoschPage: http://cbp.wzw.tum.de/index.php?id=9
        
        __ StaffPage_
        __ LangoschPage_
        
        
        .. image:: https://raw.githubusercontent.com/teese/eccpy/master/docs/images/signac_seine_bei_samois.png
           :height: 150px
           :width: 250px
        
        Example Summary Files
        ---------------------
        
        .. image:: https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/density.png
           :height: 600 px
           :width: 600 px
        
        Compare three different membrane protein families:
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        .. image:: https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/n_homol.png
           :height: 500 px
           :width: 700 px
        
        .. image:: https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/aa_propens.png
           :height: 500 px
           :width: 700 px
        
        .. image:: https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/len.png
           :height: 500 px
           :width: 700 px
        
        .. image:: https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/percent_TM.png
           :height: 500 px
           :width: 700 px
Keywords: bioinformatics protein sequence membrane conservation evolution membranous soluble polypeptide BLAST SIMAP
Platform: UNKNOWN
Description-Content-Type: text/x-rst
