README.md
pyproject.toml
setup.py
src/beta/__init__.py
src/beta/cli.py
src/beta/utils.py
src/beta/core/__init__.py
src/beta/core/corelib.py
src/beta/core/expr_combine.py
src/beta/core/fileformat_check.py
src/beta/core/opt_validator.py
src/beta/core/permp.py
src/beta/core/pscore.py
src/beta/core/runbeta.py
src/beta/core/up_down_distance.py
src/beta/core/up_down_score.py
src/beta/motif/__init__.py
src/beta/motif/bayesian_motif_comp.py
src/beta/motif/fastafrombed.py
src/beta/motif/motif_clustering.py
src/beta/motif/motif_parser.py
src/beta/motif/motif_scan.py
src/beta/references/Entrez_Symbol_DBD.txt
src/beta/references/cistrome.db
src/beta/references/cistrome.xml
src/beta/references/hg18.refseq
src/beta/references/hg19.refseq
src/beta/references/hg19_CTCF_bound.bed
src/beta/references/hg38.refseq
src/beta/references/mm10.refseq
src/beta/references/mm9.refseq
src/beta/references/mm9_CTCF_bound.bed
src/beta/templates/motiflogos.zip
src/beta/templates/script.js
src/beta/templates/styles.css
src/beta/templates/subtemplate.html
src/beta/templates/template.html
src/beta_binding_analysis.egg-info/PKG-INFO
src/beta_binding_analysis.egg-info/SOURCES.txt
src/beta_binding_analysis.egg-info/dependency_links.txt
src/beta_binding_analysis.egg-info/entry_points.txt
src/beta_binding_analysis.egg-info/requires.txt
src/beta_binding_analysis.egg-info/top_level.txt
tests/test_cli.py
tests/test_core_functions.py
tests/test_fileformat_check.py
tests/test_imports.py