Metadata-Version: 1.1
Name: refchooser
Version: 0.2.1
Summary: Tools to help choosing a reference assembly.
Home-page: https://github.com/CFSAN-Biostatistics/refchooser
Author: Steve Davis
Author-email: steven.davis@fda.hhs.gov
License: BSD
Description: ===============================
        refchooser
        ===============================
        
        
        .. Image showing the PyPI version badge - links to PyPI
        .. image:: https://img.shields.io/pypi/v/refchooser.svg
                :target: https://pypi.python.org/pypi/refchooser
        
        .. Image showing the Travis Continuous Integration test status, commented out for now
        .. .. image:: https://img.shields.io/travis/CFSAN-Biostatistics/refchooser.svg
        ..        :target: https://travis-ci.org/CFSAN-Biostatistics/refchooser
        
        
        
        Tools to help choose a reference from a list of assemblies.
        
        The refchooser project was developed by the United States Food
        and Drug Administration, Center for Food Safety and Applied Nutrition.
        
        * Free software
        * Documentation: https://refchooser.readthedocs.io
        * Source Code: https://github.com/CFSAN-Biostatistics/refchooser
        * PyPI Distribution: https://pypi.python.org/pypi/refchooser
        
        
        Features
        --------
        
        * Print a table of metrics to help choose an assembly from a collection.
        * N50
        * N90
        * Number of contigs
        * Assembly length
        * Mean mash distance to all other assemblies
        
        
        Citing refchooser
        --------------------------------------
        
        To cite refchooser, please reference the refchooser GitHub repository:
        
            https://github.com/CFSAN-Biostatistics/refchooser
        
        
        License
        -------
        
        See the LICENSE file included in the refchooser distribution.
        
        
        
        
        History
        =======
        
        0.2.1 (2019-08-20)
        ---------------------
        
        * Detect and exclude empty assemblies.
        
        
        0.2.0 (2019-07-12)
        ---------------------
        
        * Add N50 and N90 metrics.
        * Calculate a simple "Score" for each assembly, the N50/Distance ratio.
        * Combine all metrics in a single table sortable by any column.
        
        
        0.1.0 (2019-06-21)
        ---------------------
        
        * Initial version.
        
Keywords: bioinformatics,NGS,refchooser
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
