AUTHORS.md
CONTRIBUTING.md
HISTORY.md
LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
concise/__init__.py
concise/constraints.py
concise/eval_metrics.py
concise/hyopt.py
concise/initializers.py
concise/layers.py
concise/losses.py
concise/metrics.py
concise/optimizers.py
concise/regularizers.py
concise.egg-info/PKG-INFO
concise.egg-info/SOURCES.txt
concise.egg-info/dependency_links.txt
concise.egg-info/not-zip-safe
concise.egg-info/requires.txt
concise.egg-info/top_level.txt
concise/data/__init__.py
concise/data/attract.py
concise/data/encode.py
concise/data/hocomoco.py
concise/effects/__init__.py
concise/effects/dropout.py
concise/effects/gradient.py
concise/effects/ism.py
concise/effects/snp_effects.py
concise/effects/util.py
concise/legacy/__init__.py
concise/legacy/analyze.py
concise/legacy/args_sampler.py
concise/legacy/concise.py
concise/legacy/get_data.py
concise/legacy/kmer.py
concise/legacy/models.py
concise/preprocessing/__init__.py
concise/preprocessing/motifs.py
concise/preprocessing/sequence.py
concise/preprocessing/splines.py
concise/preprocessing/structure.py
concise/resources/__init__.py
concise/resources/RNAplfold/__init__.py
concise/utils/__init__.py
concise/utils/fasta.py
concise/utils/helper.py
concise/utils/letters.py
concise/utils/model_data.py
concise/utils/plot.py
concise/utils/position.py
concise/utils/pwm.py
concise/utils/splines.py
concise/utils/tf_helper.py
data/01-fixed_seq_len-1.csv
data/01-fixed_seq_len-2.csv
data/gencode_v25_chr22.gtf.pkl.gz
data/pombe_half-life_UTR3.csv
data/sample_hqtl_res.hdf5
data/RBP/PUM2_test.csv
data/RBP/PUM2_train.csv
data/RBP/PUM2_valid.csv
docs/Makefile
docs/REAMDE.md
docs/img/Concise_logo_smaller.png
docs/img/concise-figure1.png
docs/img/concise_logo.jpg
docs/img/concise_logo.png
docs/img/concise_logo_800.png
docs/img/concise_logo_text.jpg
docs/site/img/concise_logo_text.jpg
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docs/sources/contributing.md
docs/sources/effects.md
docs/sources/eval_metrics.md
docs/sources/hyopt.md
docs/sources/index.md
docs/sources/initializers.md
docs/sources/layers.md
docs/sources/losses.md
docs/sources/metrics.md
docs/sources/optimizers.md
docs/sources/regularizers.md
docs/sources/data/attract.md
docs/sources/data/encode.md
docs/sources/data/hocomoco.md
docs/sources/getting-started/getting_started.md
docs/sources/getting-started/simple_concise_model.md
docs/sources/getting-started/spline_transformation.md
docs/sources/preprocessing/sequence.md
docs/sources/preprocessing/splines.md
docs/sources/preprocessing/structure.md
docs/sources/tutorials/PWM_initialization.md
docs/sources/tutorials/effect_prediction.md
docs/sources/tutorials/getting_started.md
docs/sources/tutorials/hyper-parameter_optimization.md
docs/sources/tutorials/spline_transformation.md
docs/sources/utils/fasta.md
docs/sources/utils/model_data.md
docs/sources/utils/pwm.md
docs/sources/utils/splines.md
docs/templates/effects.md
docs/templates/eval_metrics.md
docs/templates/index.md
docs/templates/losses.md
docs/templates/metrics.md
docs/templates/optimizers.md
docs/templates/data/attract.md
docs/templates/data/encode.md
docs/templates/data/hocomoco.md
docs/templates/getting-started/getting_started.md
docs/templates/getting-started/simple_concise_model.md
docs/templates/getting-started/spline_transformation.md
docs/templates/utils/model_data.md
docs/theme_dir/img/concise_logo_text.jpg
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tests/__init__.py
tests/devel_concise_quasi_X.py
tests/manual_test_plot.py
tests/setup_concise_load_data.py
tests/setup_effect_test_data.py
tests/test_GAMSmooth.py
tests/test_concise_keras.py
tests/test_conv1d.py
tests/test_effects.py
tests/test_eval.py
tests/test_initializers.py
tests/test_layers.py
tests/test_losses.py
tests/test_metrics.py
tests/test_na_y.py
tests/test_visualization.py
tests/data/test_attract.py
tests/data/test_encode.py
tests/data/test_hocomoco.py
tests/hyopt/__init__.py
tests/hyopt/data.py
tests/hyopt/model.py
tests/hyopt/test_hyopt.py
tests/layers/test_SplineT.py
tests/old/old_test_splines.py
tests/preprocessing/test_sequence.py
tests/preprocessing/test_splines.py
tests/preprocessing/test_structure.py
tests/preprocessing/RNAplfold_data/input.fasta
tests/utils/test_model_data.py
tests/utils/test_position.py
tests/utils/test_utils_pwm.py