LICENSE
MANIFEST.in
README.md
droptables.py
master-test.sh
requirements.txt
setup.py
time-wildcards.sh
update_load.sh
update_query.sh
geminicassandra/GeminiQuery.py
geminicassandra/__init__.py
geminicassandra/anno_info.py
geminicassandra/annotations.py
geminicassandra/compression.py
geminicassandra/config.py
geminicassandra/database_cassandra.py
geminicassandra/dgidb.py
geminicassandra/func_impact.py
geminicassandra/gemini_amend.py
geminicassandra/gemini_annotate.py
geminicassandra/gemini_browser.py
geminicassandra/gemini_constants.py
geminicassandra/gemini_dbinfo.py
geminicassandra/gemini_load.py
geminicassandra/gemini_load_chunk.py
geminicassandra/gemini_main.py
geminicassandra/gemini_plot.py
geminicassandra/gemini_query.py
geminicassandra/gemini_region.py
geminicassandra/gemini_stats.py
geminicassandra/gemini_subjects.py
geminicassandra/gemini_update.py
geminicassandra/gemini_utils.py
geminicassandra/gene_table.py
geminicassandra/infotag.py
geminicassandra/install-data.py
geminicassandra/ped.py
geminicassandra/popgen.py
geminicassandra/query_expressions.py
geminicassandra/severe_impact.py
geminicassandra/snpEff.py
geminicassandra/sql.py
geminicassandra/sql_extended.py
geminicassandra/sql_utils.py
geminicassandra/stats.py
geminicassandra/structural_variants.py
geminicassandra/table_schemes.py
geminicassandra/vep.py
geminicassandra/version.py
geminicassandra.egg-info/PKG-INFO
geminicassandra.egg-info/SOURCES.txt
geminicassandra.egg-info/dependency_links.txt
geminicassandra.egg-info/not-zip-safe
geminicassandra.egg-info/requires.txt
geminicassandra.egg-info/top_level.txt
geminicassandra/data/__init__.py
geminicassandra/scripts/__init__.py
geminicassandra/scripts/gemini_install.py
geminicassandra/scripts/geminicassandra
test/ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.snippet.snpEff.vcf
test/ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.snippet.vcf
test/cassandra-test-query.sh
test/cassandra-test-setup.sh
test/data-setup.sh
test/exp
test/obs
test/test-clinvar.sh
test/test-columns.sh
test/test-exac.sh
test/test-genome.sh
test/test-genotypes.sh
test/test-load.sh
test/test-query-multicore.sh
test/test-query.sh
test/test-wildcards-multicore.sh
test/test-wildcards.sh
test/test.auto_dom.no_parents.2.ped
test/test.auto_dom.no_parents.2.vcf
test/test.auto_dom.no_parents.3.ped
test/test.auto_dom.no_parents.3.vcf
test/test.auto_dom.no_parents.4.ped
test/test.auto_dom.no_parents.4.vcf
test/test.auto_dom.no_parents.5.ped
test/test.auto_dom.no_parents.5.vcf
test/test.auto_dom.no_parents.ped
test/test.auto_dom.no_parents.vcf
test/test.auto_dom.ped
test/test.auto_dom.vcf
test/test.auto_rec.no_parents.2.ped
test/test.auto_rec.no_parents.2.vcf
test/test.auto_rec.no_parents.3.ped
test/test.auto_rec.no_parents.3.vcf
test/test.auto_rec.no_parents.4.ped
test/test.auto_rec.no_parents.4.vcf
test/test.auto_rec.no_parents.5.ped
test/test.auto_rec.no_parents.5.vcf
test/test.auto_rec.no_parents.ped
test/test.auto_rec.no_parents.vcf
test/test.auto_rec.ped
test/test.auto_rec.vcf
test/test.burden.ped
test/test.burden.vcf
test/test.cadd.vcf
test/test.clinvar.vcf
test/test.comp_het.2.vcf
test/test.comp_het.3.vcf
test/test.comp_het.ped
test/test.comp_het.vcf
test/test.cosmic.vcf
test/test.de_novo.affected.and.unaffected.ped
test/test.de_novo.affected.and.unaffected.vcf
test/test.de_novo.ped
test/test.de_novo.vcf
test/test.exac.vcf
test/test.exac.vcf.gz
test/test.exac.vcf.gz.gbi
test/test.family.vcf
test/test.fusions.ped
test/test.fusions.vcf
test/test.passonly.vcf
test/test.query.vcf
test/test.query.vcf.gz
test/test.query.vcf.gz.gbi
test/test.region.vep.vcf
test/test.roh.vcf
test/test.snpeff.vcf
test/test.snpeff.vcf.gz
test/test.snpeff.vcf.gz.gbi
test/test.somatic.ped
test/test.somatic.vcf
test/test.vcf_id.snpeff.vcf
test/test.vcf_id.snpeff.vcf.gz
test/test.vcf_id.snpeff.vcf.gz.gbi
test/test1.snpeff.vcf
test/test2.snpeff.vcf
test/test2.snpeff.vcf.gz
test/test2.snpeff.vcf.gz.gbi
test/test3.snpeff.vcf
test/test3.snpeff.vcf.gz
test/test3.snpeff.vcf.gz.gbi
test/test4.snpeff.ped
test/test4.vep.snpeff.vcf
test/test4.vep.snpeff.vcf.gz
test/test4.vep.snpeff.vcf.gz.gbi
test/test5.vep.snpeff.vcf
test/test_amend_sample.ped
test/test_extended_ped.ped
test/loading_logs/10021.csv
test/loading_logs/10021.err
test/loading_logs/10024.csv
test/loading_logs/10024.err
test/loading_logs/10027.csv
test/loading_logs/10027.err
test/loading_logs/10073.csv
test/loading_logs/10073.err
test/loading_logs/14752.csv
test/loading_logs/14755.csv
test/loading_logs/14758.csv
test/loading_logs/14853.csv
test/loading_logs/14856.csv
test/loading_logs/14859.csv
test/loading_logs/14977.csv
test/loading_logs/14980.csv
test/loading_logs/14983.csv
test/loading_logs/15049.csv
test/loading_logs/15052.csv
test/loading_logs/15055.csv
test/loading_logs/15148.csv
test/loading_logs/15151.csv
test/loading_logs/15154.csv
test/loading_logs/15238.csv
test/loading_logs/15241.csv
test/loading_logs/15244.csv
test/loading_logs/15310.csv
test/loading_logs/15313.csv
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test/loading_logs/15362.csv
test/loading_logs/15382.csv
test/loading_logs/15427.csv
test/loading_logs/15430.csv
test/loading_logs/15433.csv
test/loading_logs/15479.csv
test/loading_logs/16506.csv
test/loading_logs/16580.csv
test/loading_logs/16657.csv
test/loading_logs/16754.csv
test/loading_logs/19259.csv
test/loading_logs/19262.csv
test/loading_logs/19265.csv
test/loading_logs/19717.csv
test/loading_logs/19720.csv
test/loading_logs/19723.csv
test/loading_logs/19832.csv
test/loading_logs/19835.csv
test/loading_logs/19838.csv
test/loading_logs/19902.csv
test/loading_logs/19905.csv
test/loading_logs/19908.csv
test/loading_logs/19972.csv
test/loading_logs/19975.csv
test/loading_logs/19978.csv
test/loading_logs/20042.csv
test/loading_logs/20045.csv
test/loading_logs/20048.csv
test/loading_logs/20112.csv
test/loading_logs/20115.csv
test/loading_logs/20118.csv
test/loading_logs/20182.csv
test/loading_logs/20185.csv
test/loading_logs/20188.csv
test/loading_logs/20234.csv
test/loading_logs/20253.csv
test/loading_logs/20290.csv
test/loading_logs/20293.csv
test/loading_logs/20296.csv
test/loading_logs/20342.csv
test/loading_logs/21440.csv
test/loading_logs/21510.csv
test/loading_logs/21548.csv
test/loading_logs/21593.csv
test/loading_logs/24923.csv
test/loading_logs/24926.csv
test/loading_logs/24929.csv
test/loading_logs/25039.csv
test/loading_logs/25042.csv
test/loading_logs/25045.csv
test/loading_logs/25110.csv
test/loading_logs/25113.csv
test/loading_logs/25116.csv
test/loading_logs/25180.csv
test/loading_logs/25183.csv
test/loading_logs/25186.csv
test/loading_logs/25250.csv
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test/loading_logs/25256.csv
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test/loading_logs/25328.csv
test/loading_logs/25331.csv
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test/loading_logs/25399.csv
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test/loading_logs/25448.csv
test/loading_logs/25467.csv
test/loading_logs/25505.csv
test/loading_logs/25508.csv
test/loading_logs/25511.csv
test/loading_logs/25557.csv
test/loading_logs/8913.csv
test/loading_logs/8913.err
test/loading_logs/8916.csv
test/loading_logs/8916.err
test/loading_logs/9217.csv
test/loading_logs/9217.err
test/loading_logs/9479.csv
test/loading_logs/9479.err
test/loading_logs/9482.csv
test/loading_logs/9482.err
test/loading_logs/9485.csv
test/loading_logs/9485.err
test/loading_logs/9562.csv
test/loading_logs/9562.err
test/loading_logs/9565.csv
test/loading_logs/9565.err
test/loading_logs/9568.csv
test/loading_logs/9568.err
test/loading_logs/9632.csv
test/loading_logs/9632.err
test/loading_logs/9635.csv
test/loading_logs/9635.err
test/loading_logs/9638.csv
test/loading_logs/9638.err
test/loading_logs/9702.csv
test/loading_logs/9702.err
test/loading_logs/9705.csv
test/loading_logs/9705.err
test/loading_logs/9708.csv
test/loading_logs/9708.err
test/loading_logs/9773.csv
test/loading_logs/9773.err
test/loading_logs/9776.csv
test/loading_logs/9776.err
test/loading_logs/9779.csv
test/loading_logs/9779.err
test/loading_logs/9843.csv
test/loading_logs/9843.err
test/loading_logs/9846.csv
test/loading_logs/9846.err
test/loading_logs/9849.csv
test/loading_logs/9849.err
test/loading_logs/9913.csv
test/loading_logs/9913.err
test/loading_logs/9916.csv
test/loading_logs/9916.err
test/loading_logs/9919.csv
test/loading_logs/9919.err
test/loading_logs/9965.csv
test/loading_logs/9965.err
test/loading_logs/9984.csv
test/loading_logs/9984.err