MANIFEST.in
README.md
grnm.py
setup.py
clustering/__init__.py
clustering/louvain_clustering.py
dimensionality_reduction/__init__.py
dimensionality_reduction/graph_autoencoder.py
dimensionality_reduction/graph_preprocessing.py
dimensionality_reduction/pca_preprocessing.py
dimensionality_reduction/umap_preprocessing.py
example_data/atac_pca.csv
example_data/cell_marker.pkl
example_data/edges.csv
example_data/rna_pca.csv
example_data/tf_gene_motif.csv
example_data/tf_target.csv
grnm.egg-info/PKG-INFO
grnm.egg-info/SOURCES.txt
grnm.egg-info/dependency_links.txt
grnm.egg-info/not-zip-safe
grnm.egg-info/requires.txt
grnm.egg-info/top_level.txt
notebooks/example.ipynb
plotting/__init__.py
plotting/generate_heatmap.py
plotting/grn_visualization.py
plotting/module_target_visualization.py