LICENSE
MANIFEST.in
README.md
pyproject.toml
openbioskill/__init__.py
openbioskill/cli.py
openbioskill/installer.py
openbioskill.egg-info/PKG-INFO
openbioskill.egg-info/SOURCES.txt
openbioskill.egg-info/dependency_links.txt
openbioskill.egg-info/entry_points.txt
openbioskill.egg-info/top_level.txt
skills/__init__.py
skills/adaptyv/SKILL.md
skills/adaptyv/reference/api_reference.md
skills/adaptyv/reference/examples.md
skills/adaptyv/reference/experiments.md
skills/adaptyv/reference/protein_optimization.md
skills/aeon/SKILL.md
skills/aeon/references/anomaly_detection.md
skills/aeon/references/classification.md
skills/aeon/references/clustering.md
skills/aeon/references/datasets_benchmarking.md
skills/aeon/references/distances.md
skills/aeon/references/forecasting.md
skills/aeon/references/networks.md
skills/aeon/references/regression.md
skills/aeon/references/segmentation.md
skills/aeon/references/similarity_search.md
skills/aeon/references/transformations.md
skills/alpha-vantage/SKILL.md
skills/alpha-vantage/references/commodities.md
skills/alpha-vantage/references/economic-indicators.md
skills/alpha-vantage/references/forex-crypto.md
skills/alpha-vantage/references/fundamentals.md
skills/alpha-vantage/references/intelligence.md
skills/alpha-vantage/references/options.md
skills/alpha-vantage/references/technical-indicators.md
skills/alpha-vantage/references/time-series.md
skills/alphafold-database/SKILL.md
skills/alphafold-database/references/api_reference.md
skills/anndata/SKILL.md
skills/anndata/references/best_practices.md
skills/anndata/references/concatenation.md
skills/anndata/references/data_structure.md
skills/anndata/references/io_operations.md
skills/anndata/references/manipulation.md
skills/arboreto/SKILL.md
skills/arboreto/references/algorithms.md
skills/arboreto/references/basic_inference.md
skills/arboreto/references/distributed_computing.md
skills/arboreto/scripts/basic_grn_inference.py
skills/astropy/SKILL.md
skills/astropy/references/coordinates.md
skills/astropy/references/cosmology.md
skills/astropy/references/fits.md
skills/astropy/references/tables.md
skills/astropy/references/time.md
skills/astropy/references/units.md
skills/astropy/references/wcs_and_other_modules.md
skills/benchling-integration/SKILL.md
skills/benchling-integration/references/api_endpoints.md
skills/benchling-integration/references/authentication.md
skills/benchling-integration/references/sdk_reference.md
skills/biopython/SKILL.md
skills/biopython/references/advanced.md
skills/biopython/references/alignment.md
skills/biopython/references/blast.md
skills/biopython/references/databases.md
skills/biopython/references/phylogenetics.md
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skills/biopython/references/structure.md
skills/biorxiv-database/SKILL.md
skills/biorxiv-database/references/api_reference.md
skills/biorxiv-database/scripts/biorxiv_search.py
skills/bioservices/SKILL.md
skills/bioservices/references/identifier_mapping.md
skills/bioservices/references/services_reference.md
skills/bioservices/references/workflow_patterns.md
skills/bioservices/scripts/batch_id_converter.py
skills/bioservices/scripts/compound_cross_reference.py
skills/bioservices/scripts/pathway_analysis.py
skills/bioservices/scripts/protein_analysis_workflow.py
skills/brenda-database/SKILL.md
skills/brenda-database/references/api_reference.md
skills/brenda-database/scripts/brenda_queries.py
skills/brenda-database/scripts/brenda_visualization.py
skills/brenda-database/scripts/enzyme_pathway_builder.py
skills/cellxgene-census/SKILL.md
skills/cellxgene-census/references/census_schema.md
skills/cellxgene-census/references/common_patterns.md
skills/chembl-database/SKILL.md
skills/chembl-database/references/api_reference.md
skills/chembl-database/scripts/example_queries.py
skills/cirq/SKILL.md
skills/cirq/references/building.md
skills/cirq/references/experiments.md
skills/cirq/references/hardware.md
skills/cirq/references/noise.md
skills/cirq/references/simulation.md
skills/cirq/references/transformation.md
skills/citation-management/SKILL.md
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skills/citation-management/references/bibtex_formatting.md
skills/citation-management/references/citation_validation.md
skills/citation-management/references/google_scholar_search.md
skills/citation-management/references/metadata_extraction.md
skills/citation-management/references/pubmed_search.md
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skills/citation-management/scripts/extract_metadata.py
skills/citation-management/scripts/format_bibtex.py
skills/citation-management/scripts/search_google_scholar.py
skills/citation-management/scripts/search_pubmed.py
skills/citation-management/scripts/validate_citations.py
skills/clinical-decision-support/SKILL.md
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skills/clinical-decision-support/assets/clinical_pathway_template.tex
skills/clinical-decision-support/assets/cohort_analysis_template.tex
skills/clinical-decision-support/assets/color_schemes.tex
skills/clinical-decision-support/assets/example_gbm_cohort.md
skills/clinical-decision-support/assets/recommendation_strength_guide.md
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skills/clinical-decision-support/references/biomarker_classification.md
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skills/clinical-decision-support/references/evidence_synthesis.md
skills/clinical-decision-support/references/outcome_analysis.md
skills/clinical-decision-support/references/patient_cohort_analysis.md
skills/clinical-decision-support/references/treatment_recommendations.md
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skills/clinical-decision-support/scripts/build_decision_tree.py
skills/clinical-decision-support/scripts/create_cohort_tables.py
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skills/clinical-reports/SKILL.md
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skills/clinical-reports/assets/pathology_report_template.md
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skills/clinical-reports/assets/radiology_report_template.md
skills/clinical-reports/assets/soap_note_template.md
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skills/clinical-reports/references/case_report_guidelines.md
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skills/clinical-reports/references/medical_terminology.md
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skills/clinical-reports/references/regulatory_compliance.md
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skills/clinical-reports/scripts/compliance_checker.py
skills/clinical-reports/scripts/extract_clinical_data.py
skills/clinical-reports/scripts/format_adverse_events.py
skills/clinical-reports/scripts/generate_report_template.py
skills/clinical-reports/scripts/terminology_validator.py
skills/clinical-reports/scripts/validate_case_report.py
skills/clinical-reports/scripts/validate_trial_report.py
skills/clinicaltrials-database/SKILL.md
skills/clinicaltrials-database/references/api_reference.md
skills/clinicaltrials-database/scripts/query_clinicaltrials.py
skills/clinpgx-database/SKILL.md
skills/clinpgx-database/references/api_reference.md
skills/clinpgx-database/scripts/query_clinpgx.py
skills/clinvar-database/SKILL.md
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skills/clinvar-database/references/clinical_significance.md
skills/clinvar-database/references/data_formats.md
skills/cobrapy/SKILL.md
skills/cobrapy/references/api_quick_reference.md
skills/cobrapy/references/workflows.md
skills/cosmic-database/SKILL.md
skills/cosmic-database/references/cosmic_data_reference.md
skills/cosmic-database/scripts/download_cosmic.py
skills/dask/SKILL.md
skills/dask/references/arrays.md
skills/dask/references/bags.md
skills/dask/references/best-practices.md
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skills/dask/references/futures.md
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skills/datacommons-client/SKILL.md
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skills/datacommons-client/references/node.md
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skills/deepchem/SKILL.md
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skills/deepchem/scripts/predict_solubility.py
skills/deepchem/scripts/transfer_learning.py
skills/deeptools/SKILL.md
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skills/denario/SKILL.md
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skills/denario/references/research_pipeline.md
skills/diffdock/SKILL.md
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skills/diffdock/references/confidence_and_limitations.md
skills/diffdock/references/parameters_reference.md
skills/diffdock/references/workflows_examples.md
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skills/diffdock/scripts/prepare_batch_csv.py
skills/diffdock/scripts/setup_check.py
skills/dnanexus-integration/SKILL.md
skills/dnanexus-integration/references/app-development.md
skills/dnanexus-integration/references/configuration.md
skills/dnanexus-integration/references/data-operations.md
skills/dnanexus-integration/references/job-execution.md
skills/dnanexus-integration/references/python-sdk.md
skills/drugbank-database/SKILL.md
skills/drugbank-database/references/chemical-analysis.md
skills/drugbank-database/references/data-access.md
skills/drugbank-database/references/drug-queries.md
skills/drugbank-database/references/interactions.md
skills/drugbank-database/references/targets-pathways.md
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skills/edgartools/SKILL.md
skills/edgartools/references/ai-integration.md
skills/edgartools/references/companies.md
skills/edgartools/references/data-objects.md
skills/edgartools/references/entity-facts.md
skills/edgartools/references/filings.md
skills/edgartools/references/financial-data.md
skills/edgartools/references/xbrl.md
skills/ena-database/SKILL.md
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skills/ensembl-database/SKILL.md
skills/ensembl-database/references/api_endpoints.md
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skills/esm/SKILL.md
skills/esm/references/esm-c-api.md
skills/esm/references/esm3-api.md
skills/esm/references/forge-api.md
skills/esm/references/workflows.md
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skills/flowio/SKILL.md
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skills/gene-database/SKILL.md
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skills/treatment-plans/assets/one_page_treatment_plan.tex
skills/treatment-plans/assets/pain_management_plan.tex
skills/treatment-plans/assets/perioperative_care_plan.tex
skills/treatment-plans/assets/quality_checklist.md
skills/treatment-plans/assets/rehabilitation_treatment_plan.tex
skills/treatment-plans/references/README.md
skills/treatment-plans/references/goal_setting_frameworks.md
skills/treatment-plans/references/intervention_guidelines.md
skills/treatment-plans/references/regulatory_compliance.md
skills/treatment-plans/references/specialty_specific_guidelines.md
skills/treatment-plans/references/treatment_plan_standards.md
skills/treatment-plans/scripts/check_completeness.py
skills/treatment-plans/scripts/generate_template.py
skills/treatment-plans/scripts/timeline_generator.py
skills/treatment-plans/scripts/validate_treatment_plan.py
skills/umap-learn/SKILL.md
skills/umap-learn/references/api_reference.md
skills/uniprot-database/SKILL.md
skills/uniprot-database/references/api_examples.md
skills/uniprot-database/references/api_fields.md
skills/uniprot-database/references/id_mapping_databases.md
skills/uniprot-database/references/query_syntax.md
skills/uniprot-database/scripts/uniprot_client.py
skills/usfiscaldata/SKILL.md
skills/usfiscaldata/references/api-basics.md
skills/usfiscaldata/references/datasets-debt.md
skills/usfiscaldata/references/datasets-fiscal.md
skills/usfiscaldata/references/datasets-interest-rates.md
skills/usfiscaldata/references/datasets-securities.md
skills/usfiscaldata/references/examples.md
skills/usfiscaldata/references/parameters.md
skills/usfiscaldata/references/response-format.md
skills/uspto-database/SKILL.md
skills/uspto-database/references/additional_apis.md
skills/uspto-database/references/patentsearch_api.md
skills/uspto-database/references/peds_api.md
skills/uspto-database/references/trademark_api.md
skills/uspto-database/scripts/patent_search.py
skills/uspto-database/scripts/peds_client.py
skills/uspto-database/scripts/trademark_client.py
skills/vaex/SKILL.md
skills/vaex/references/core_dataframes.md
skills/vaex/references/data_processing.md
skills/vaex/references/io_operations.md
skills/vaex/references/machine_learning.md
skills/vaex/references/performance.md
skills/vaex/references/visualization.md
skills/venue-templates/SKILL.md
skills/venue-templates/assets/examples/cell_summary_example.md
skills/venue-templates/assets/examples/medical_structured_abstract.md
skills/venue-templates/assets/examples/nature_abstract_examples.md
skills/venue-templates/assets/examples/neurips_introduction_example.md
skills/venue-templates/assets/grants/nih_specific_aims.tex
skills/venue-templates/assets/grants/nsf_proposal_template.tex
skills/venue-templates/assets/journals/nature_article.tex
skills/venue-templates/assets/journals/neurips_article.tex
skills/venue-templates/assets/journals/plos_one.tex
skills/venue-templates/assets/posters/beamerposter_academic.tex
skills/venue-templates/references/cell_press_style.md
skills/venue-templates/references/conferences_formatting.md
skills/venue-templates/references/cs_conference_style.md
skills/venue-templates/references/grants_requirements.md
skills/venue-templates/references/journals_formatting.md
skills/venue-templates/references/medical_journal_styles.md
skills/venue-templates/references/ml_conference_style.md
skills/venue-templates/references/nature_science_style.md
skills/venue-templates/references/posters_guidelines.md
skills/venue-templates/references/reviewer_expectations.md
skills/venue-templates/references/venue_writing_styles.md
skills/venue-templates/scripts/customize_template.py
skills/venue-templates/scripts/query_template.py
skills/venue-templates/scripts/validate_format.py
skills/zarr-python/SKILL.md
skills/zarr-python/references/api_reference.md
skills/zinc-database/SKILL.md
skills/zinc-database/references/api_reference.md