LICENSE
LICENSE.txt
MANIFEST.in
README.md
README_CLEARMAP.md
pyproject.toml
setup.py
ClearMap/Compile.py
ClearMap/Environment.py
ClearMap/Settings.py
ClearMap/__init__.py
ClearMap/Alignment/Annotation.py
ClearMap/Alignment/Elastix.py
ClearMap/Alignment/Elastix_GF.py
ClearMap/Alignment/Resampling.py
ClearMap/Alignment/__init__.py
ClearMap/Alignment/Stitching/StitchingRigid.py
ClearMap/Alignment/Stitching/StitchingWobbly.py
ClearMap/Alignment/Stitching/Tracking.py
ClearMap/Alignment/Stitching/__init__.py
ClearMap/Alignment/Stitching/_Todo/StitchingRigid.py
ClearMap/Alignment/Stitching/_Todo/StitchingTera.py
ClearMap/Analysis/DimensionReduction.py
ClearMap/Analysis/__init__.py
ClearMap/Analysis/Curves/Extrapolation.py
ClearMap/Analysis/Curves/Resampling.py
ClearMap/Analysis/Curves/__init__.py
ClearMap/Analysis/Graphs/Graph.py
ClearMap/Analysis/Graphs/GraphGt.py
ClearMap/Analysis/Graphs/GraphProcessing.py
ClearMap/Analysis/Graphs/GraphRendering.py
ClearMap/Analysis/Graphs/__init__.py
ClearMap/Analysis/Measurements/MaximaDetection.py
ClearMap/Analysis/Measurements/MeasureExpression.py
ClearMap/Analysis/Measurements/MeasureRadius.py
ClearMap/Analysis/Measurements/ShapeDetection.py
ClearMap/Analysis/Measurements/Voxelization.py
ClearMap/Analysis/Measurements/__init__.py
ClearMap/Analysis/Measurements/_Todo/Orientation.py
ClearMap/Analysis/Measurements/_Todo/OrientationCode.pyx
ClearMap/Analysis/Statistics/GroupStatistics.py
ClearMap/Analysis/Statistics/MultipleComparisonCorrection.py
ClearMap/Analysis/Statistics/StatisticalTests.py
ClearMap/Analysis/Statistics/__init__.py
ClearMap/External/__init__.py
ClearMap/External/pickle_python_2.py
ClearMap/External/pickle_python_3.py
ClearMap/External/utils.py
ClearMap/External/elastix/src/Testing/elx_compare_checksum.py
ClearMap/External/elastix/src/Testing/elx_compare_finalmetricvalue.py
ClearMap/External/elastix/src/Testing/elx_compare_landmarks.py
ClearMap/External/elastix/src/Testing/elx_compare_overlap.py
ClearMap/External/elastix/src/Testing/elx_get_checksum_list.py
ClearMap/External/elastix/src/Testing/elx_get_tp_list.py
ClearMap/External/elastix/src/Testing/elx_nightly_dashboard.py
ClearMap/External/elastix/src/tools/elastixUncrustify.py
ClearMap/External/elastix/src/tools/elxCMakeCaseConversion.py
ClearMap/External/elastix/src/tools/elxCheckCopyrightNotice.py
ClearMap/External/elastix/src/tools/elxReplaceCopyrightNotice.py
ClearMap/External/elastix/src/tools/elxSetSVNProperties.py
ClearMap/External/geodesic_distance/__init__.py
ClearMap/External/geodesic_distance/setup.py
ClearMap/External/geodesic_distance/test2d.py
ClearMap/External/geodesic_distance/test3d.py
ClearMap/GF_extras/IlastikClassification.py
ClearMap/GF_extras/cell_intensity.py
ClearMap/GF_extras/cell_intensity_dask.py
ClearMap/GF_extras/clearmap2_statistics_code_v6.py
ClearMap/GF_extras/ilastik_code_v6.py
ClearMap/GF_extras/ilastik_code_v7.py
ClearMap/GF_extras/ilastik_code_v8.py
ClearMap/GF_extras/clearmap1_GF/IO_GF.py
ClearMap/GF_extras/clearmap1_GF/ParameterTools.py
ClearMap/GF_extras/clearmap1_GF/ProcessWriter.py
ClearMap/GF_extras/clearmap1_GF/RAW.py
ClearMap/GF_extras/clearmap1_GF/Settings.py
ClearMap/GF_extras/clearmap1_GF/TIF.py
ClearMap/GF_extras/clearmap1_GF/clearmap1_parameter_file.py
ClearMap/GF_extras/clearmap1_GF/Analysis/Voxelization.py
ClearMap/GF_extras/clearmap1_GF/Analysis/VoxelizationCode.pyx
ClearMap/GF_extras/clearmap1_GF/Analysis/Voxelization_GF.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/BackgroundRemoval.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/CellDetection.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/CellDetection_GF.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/CellSizeDetection.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/GreyReconstruction.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/IlluminationCorrection.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/ImageStatistics.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/MaximaDetection.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/SpotDetection.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/StackProcessing.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/__init__.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/parallel_processing_GF.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/sequential_processing_GF.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/sequential_processing_GF_v2.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/spot_detection_processing_GF.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/Convolution.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/DoGFilter.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/FilterKernel.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/LinearFilter.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/StructureElement.py
ClearMap/GF_extras/clearmap1_GF/ImageProcessing/Filter/__init__.py
ClearMap/IO/CSV.py
ClearMap/IO/FileList.py
ClearMap/IO/FileUtils.py
ClearMap/IO/GT.py
ClearMap/IO/IO.py
ClearMap/IO/MHD.py
ClearMap/IO/MMP.py
ClearMap/IO/NPY.py
ClearMap/IO/NRRD.py
ClearMap/IO/SMA.py
ClearMap/IO/Slice.py
ClearMap/IO/Source.py
ClearMap/IO/TIF.py
ClearMap/IO/Temporary.py
ClearMap/IO/Workspace.py
ClearMap/IO/__init__.py
ClearMap/ImageProcessing/GreyReconstruction.py
ClearMap/ImageProcessing/IlluminationCorrection.py
ClearMap/ImageProcessing/LightsheetCorrection.py
ClearMap/ImageProcessing/LocalStatistics.py
ClearMap/ImageProcessing/__init__.py
ClearMap/ImageProcessing/Binary/Filling.py
ClearMap/ImageProcessing/Binary/FillingCode.pyx
ClearMap/ImageProcessing/Binary/Smoothing.py
ClearMap/ImageProcessing/Binary/__init__.py
ClearMap/ImageProcessing/Clipping/Clipping.py
ClearMap/ImageProcessing/Clipping/ClippingCode.pyx
ClearMap/ImageProcessing/Clipping/__init__.py
ClearMap/ImageProcessing/Differentiation/Gradient.py
ClearMap/ImageProcessing/Differentiation/Hessian.py
ClearMap/ImageProcessing/Differentiation/HessianCode.pyx
ClearMap/ImageProcessing/Differentiation/__init__.py
ClearMap/ImageProcessing/Experts/Cells.py
ClearMap/ImageProcessing/Experts/Vasculature.py
ClearMap/ImageProcessing/Experts/__init__.py
ClearMap/ImageProcessing/Filter/FilterKernel.py
ClearMap/ImageProcessing/Filter/StructureElement.py
ClearMap/ImageProcessing/Filter/__init__.py
ClearMap/ImageProcessing/Filter/Rank/Bilateral.py
ClearMap/ImageProcessing/Filter/Rank/BilateralCode.pyx
ClearMap/ImageProcessing/Filter/Rank/Parametric.py
ClearMap/ImageProcessing/Filter/Rank/ParametricCode.pyx
ClearMap/ImageProcessing/Filter/Rank/Percentile.py
ClearMap/ImageProcessing/Filter/Rank/PercentileCode.pyx
ClearMap/ImageProcessing/Filter/Rank/Rank.py
ClearMap/ImageProcessing/Filter/Rank/RankCode.pyx
ClearMap/ImageProcessing/Filter/Rank/RankCoreCode.pxd
ClearMap/ImageProcessing/Filter/Rank/RankCoreCode.pyx
ClearMap/ImageProcessing/Filter/Rank/RankResample.py
ClearMap/ImageProcessing/Filter/Rank/__init__.py
ClearMap/ImageProcessing/Filter/Rank/_Todo/RankInterpolation/RankCoreCode.pyx
ClearMap/ImageProcessing/Filter/Rank/_Todo/RankInterpolation/__init__.py
ClearMap/ImageProcessing/MachineLearning/Torch.py
ClearMap/ImageProcessing/MachineLearning/__init__.py
ClearMap/ImageProcessing/MachineLearning/VesselFilling/VesselFilling.py
ClearMap/ImageProcessing/MachineLearning/VesselFilling/VesselFillingNetwork.py
ClearMap/ImageProcessing/MachineLearning/VesselFilling/__init__.py
ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training/class_balancing_loss.py
ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training/contrast_loss.py
ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training/dataset.py
ClearMap/ImageProcessing/MachineLearning/VesselFilling/Training/visualize.py
ClearMap/ImageProcessing/Skeletonization/PK12.py
ClearMap/ImageProcessing/Skeletonization/SkeletonProcessing.py
ClearMap/ImageProcessing/Skeletonization/Skeletonization.py
ClearMap/ImageProcessing/Skeletonization/__init__.py
ClearMap/ImageProcessing/Thresholding/Thresholding.py
ClearMap/ImageProcessing/Thresholding/ThresholdingCode.pyx
ClearMap/ImageProcessing/Thresholding/__init__.py
ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding/HysteresisThresholding.py
ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding/HysteresisThresholdingCode.pyx
ClearMap/ImageProcessing/Thresholding/_Todo/HysteresisThresholding/__init__.py
ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding/SeededThresholding.py
ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding/SeededThresholdingCode.pyx
ClearMap/ImageProcessing/Thresholding/_Todo/SeededThresholding/__init__.py
ClearMap/ImageProcessing/Topology/Topology2d.py
ClearMap/ImageProcessing/Topology/Topology3d.py
ClearMap/ImageProcessing/Topology/__init__.py
ClearMap/ImageProcessing/Tracing/Connect.py
ClearMap/ImageProcessing/Tracing/Trace.py
ClearMap/ImageProcessing/Tracing/TraceCode.hpp
ClearMap/ImageProcessing/Tracing/TraceCode.pyx
ClearMap/ImageProcessing/Tracing/__init__.py
ClearMap/ParallelProcessing/Block.py
ClearMap/ParallelProcessing/BlockProcessing.py
ClearMap/ParallelProcessing/ParallelTraceback.py
ClearMap/ParallelProcessing/ProcessWriter.py
ClearMap/ParallelProcessing/SharedMemoryArray.py
ClearMap/ParallelProcessing/SharedMemoryManager.py
ClearMap/ParallelProcessing/__init__.py
ClearMap/ParallelProcessing/DataProcessing/ArrayProcessing.py
ClearMap/ParallelProcessing/DataProcessing/ArrayProcessingCode.pyx
ClearMap/ParallelProcessing/DataProcessing/ConvolvePointList.py
ClearMap/ParallelProcessing/DataProcessing/ConvolvePointListCode.pyx
ClearMap/ParallelProcessing/DataProcessing/DevolvePointList.py
ClearMap/ParallelProcessing/DataProcessing/DevolvePointListCode.pyx
ClearMap/ParallelProcessing/DataProcessing/MeasurePointList.py
ClearMap/ParallelProcessing/DataProcessing/MeasurePointListCode.pyx
ClearMap/ParallelProcessing/DataProcessing/StatisticsPointList.py
ClearMap/ParallelProcessing/DataProcessing/StatisticsPointListCode.pyx
ClearMap/ParallelProcessing/DataProcessing/__init__.py
ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayIOCode.pyx
ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessing.py
ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessingCode.pyx
ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessingCode_New.pyx
ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessingCode_New_2.pyx
ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessing_New.py
ClearMap/ParallelProcessing/DataProcessing/_Old/ArrayProcessing_New_2.py
ClearMap/ParallelProcessing/DataProcessing/_Old/ArraylIO.py
ClearMap/ParallelProcessing/DataProcessing/_Old/LargeData.py
ClearMap/ParallelProcessing/DataProcessing/_Old/LargeDataCode.pyx
ClearMap/ParallelProcessing/DataProcessing/_Old/LineIteration.hpp
ClearMap/ParallelProcessing/DataProcessing/_Old/MeasureExpression.py
ClearMap/ParallelProcessing/DataProcessing/_Old/MeasureExpressionCode.pyx
ClearMap/ParallelProcessing/DataProcessing/_Old/cython_correlate.py
ClearMap/ParallelProcessing/DataProcessing/_Old/setup.py
ClearMap/Scripts/CellMap.py
ClearMap/Scripts/CellMap_zl_20221116.py
ClearMap/Scripts/CellMap_zl_20221117.py
ClearMap/Scripts/TubeMap.py
ClearMap/Scripts/__init__.py
ClearMap/Tests/Files.py
ClearMap/Tests/__init__.py
ClearMap/Utils/Formatting.py
ClearMap/Utils/HierarchicalDict.py
ClearMap/Utils/Lazy.py
ClearMap/Utils/RegularExpression.py
ClearMap/Utils/Sound.py
ClearMap/Utils/TagExpression.py
ClearMap/Utils/Timer.py
ClearMap/Utils/__init__.py
ClearMap/Utils/exceptions.py
ClearMap/Utils/utilities.py
ClearMap/Visualization/Color.py
ClearMap/Visualization/Plot3d.py
ClearMap/Visualization/__init__.py
ClearMap/Visualization/Matplotlib/PlotUtils.py
ClearMap/Visualization/Matplotlib/__init__.py
ClearMap/Visualization/Mesh/IcoSphere.py
ClearMap/Visualization/Mesh/__init__.py
ClearMap/Visualization/Qt/DataViewer.py
ClearMap/Visualization/Qt/Plot3d.py
ClearMap/Visualization/Qt/Utils.py
ClearMap/Visualization/Qt/__init__.py
ClearMap/Visualization/Qt/_Todo/ImageItem.py
ClearMap/Visualization/Qt/_Todo/GUI/DataViewerSimple.py
ClearMap/Visualization/Qt/_Todo/GUI/FileDialog.py
ClearMap/Visualization/Qt/_Todo/GUI/GUI.py
ClearMap/Visualization/Qt/_Todo/GUI/ImageProcessing.py
ClearMap/Visualization/Qt/_Todo/GUI/Parameter.py
ClearMap/Visualization/Qt/_Todo/GUI/ParameterItems.py
ClearMap/Visualization/Qt/_Todo/GUI/PipelineViewer.py
ClearMap/Visualization/Qt/_Todo/GUI/__init__.py
ClearMap/Visualization/Vispy/GraphVisual.py
ClearMap/Visualization/Vispy/Plot3d.py
ClearMap/Visualization/Vispy/PlotGraph3d.py
ClearMap/Visualization/Vispy/TurntableCamera.py
ClearMap/Visualization/Vispy/VolumeVisual.py
ClearMap/Visualization/Vispy/__init__.py
ClearMap/Visualization/_Todo/Plot.py
ClearMap/Visualization/_Todo/plot_utils.py
clearmap_nmr.egg-info/PKG-INFO
clearmap_nmr.egg-info/SOURCES.txt
clearmap_nmr.egg-info/dependency_links.txt
clearmap_nmr.egg-info/requires.txt
clearmap_nmr.egg-info/top_level.txt