How to cite?
============

.. _cite:

If you use this software in your research, please cite the `Celldetective <https://www.biorxiv.org/content/10.1101/2024.03.15.585250v1>`_  paper (currently preprint):

.. code-block:: raw

    @article {Torro2024.03.15.585250,
        author = {R{\'e}my Torro and Beatriz D{\`\i}az-Bello and Dalia El Arawi and Lorna Ammer and Patrick Chames and Kheya Sengupta and Laurent Limozin},
        title = {Celldetective: an AI-enhanced image analysis tool for unraveling dynamic cell interactions},
        elocation-id = {2024.03.15.585250},
        year = {2024},
        doi = {10.1101/2024.03.15.585250},
        publisher = {Cold Spring Harbor Laboratory},
        abstract = {A current key challenge in bioimaging is the analysis of multimodal and multidimensional data reporting dynamic interactions between diverse cell populations. We developed Celldetective, a software that integrates AI-based segmentation and tracking algorithms and automated signal analysis into a user-friendly graphical interface. It offers complete interactive visualization, annotation, and training capabilities. We demonstrate it by analyzing original experimental data of spreading immune effector cells as well as antibody-dependent cell cytotoxicity events using multimodal fluorescence microscopy.Competing Interest StatementThe authors have declared no competing interest.},
        URL = {https://www.biorxiv.org/content/early/2024/03/17/2024.03.15.585250},
        eprint = {https://www.biorxiv.org/content/early/2024/03/17/2024.03.15.585250.full.pdf},
        journal = {bioRxiv}
    }


Make sure you to cite the papers of any segmentation model (:term:`StarDist`, :term:`Cellpose`) or tracker (:term:`bTrack`) you used through Celldetective.
