LICENSE
MANIFEST.in
README.md
pyproject.toml
BayesForge/__init__.py
BayesForge.egg-info/PKG-INFO
BayesForge.egg-info/SOURCES.txt
BayesForge.egg-info/dependency_links.txt
BayesForge.egg-info/requires.txt
BayesForge.egg-info/top_level.txt
BayesForge/BNN/__init__.py
BayesForge/BNN/activations.py
BayesForge/BNN/bnn.py
BayesForge/Build/Build_NP_light.py
BayesForge/Build/Build_R_documentation.py
BayesForge/Build/Build_TFP_light.py
BayesForge/Build/Build_test_file.py
BayesForge/Causal/__init__.py
BayesForge/Causal/dag.py
BayesForge/Data/manip.py
BayesForge/Diagnostic/Diag.py
BayesForge/Diagnostic/Diag2.py
BayesForge/Diagnostic/__init__.py
BayesForge/Diagnostic/jax_diagnostics.py
BayesForge/Diagnostic/jax_summary.py
BayesForge/Diagnostic/patch_diag.py
BayesForge/Diagnostic/ppc.py
BayesForge/Diagnostic/regression_plot.py
BayesForge/Diagnostic/sensitivity.py
BayesForge/Diagnostic/sharding_safeguards.py
BayesForge/Distributions/__init__.py
BayesForge/Distributions/np_dists.py
BayesForge/Distributions/tfp_dists.py
BayesForge/ML/KMeans.py
BayesForge/ML/__init__.py
BayesForge/ML/ml.py
BayesForge/Main/__init__.py
BayesForge/Main/main.py
BayesForge/Models/BNNC.py
BayesForge/Models/DPMM.py
BayesForge/Models/GMM.py
BayesForge/Models/PCA.py
BayesForge/Models/SRM.py
BayesForge/Models/__init__.py
BayesForge/Models/models.py
BayesForge/Models/surv.py
BayesForge/NBDA/NBDA.py
BayesForge/NBDA/__init__.py
BayesForge/Network/Net.py
BayesForge/Network/__init__.py
BayesForge/Network/explorer.py
BayesForge/Network/layouts.py
BayesForge/Network/metrics.py
BayesForge/Network/model_effects.py
BayesForge/Network/model_effects2.py
BayesForge/Network/util.py
BayesForge/Network/vizfeatures.py
BayesForge/Network/assets/netexplorer/d3-tip.js
BayesForge/Network/assets/netexplorer/d3.min.js
BayesForge/Network/assets/netexplorer/logo.jpg
BayesForge/Network/assets/netexplorer/patron1.txt
BayesForge/Network/assets/netexplorer/patron2.txt
BayesForge/Network/assets/netexplorer/save.png
BayesForge/Network/assets/netexplorer/style.css
BayesForge/Parallel/__init__.py
BayesForge/Parallel/simulate.py
BayesForge/PostModel/__init__.py
BayesForge/PostModel/model_graph.py
BayesForge/PostModel/to_latex.py
BayesForge/R/BF doc.py
BayesForge/Resources/__init__.py
BayesForge/Resources/datasets.py
BayesForge/Samplers/Model_handler.py
BayesForge/Samplers/__init__.py
BayesForge/Samplers/mcmc_numpyro.py
BayesForge/Samplers/mcmc_tfp.py
BayesForge/Samplers/SVI/__init__.py
BayesForge/Samplers/SVI/svi_numpyro.py
BayesForge/SetDevice/__init__.py
BayesForge/SetDevice/set.py
BayesForge/Utils/Effects.py
BayesForge/Utils/Gaussian.py
BayesForge/Utils/ImportManager.py
BayesForge/Utils/SampledData.py
BayesForge/Utils/__init__.py
BayesForge/Utils/infer_discrete.py
BayesForge/Utils/link.py
BayesForge/Utils/rng.py
Documentation/__init__.py
Documentation/_setup.py
Test/14.SampledData.py
Test/conftest.py
Test/Capture-Recapture (WIP)/check_parity.py
Test/Capture-Recapture (WIP)/compare_cjs_ms.py
Test/Capture-Recapture (WIP)/model_BF.py
Test/Capture-Recapture (WIP)/plot_comparison.py
Test/Capture-Recapture (WIP)/prepare_data.py
Test/Capture-Recapture (WIP)/run_phase3_scalability.py
Test/Capture-Recapture (WIP)/run_stan_benchmark.py
Test/Capture-Recapture (WIP)/verify_data.py
Test/Causal & DAG (WIP)/demo.py
Test/Causal & DAG (WIP)/run_all.py
Test/Causal & DAG (WIP)/test_causal_dag.py
Test/Causal & DAG (WIP)/test_model_graph.py
Test/Copula (WIP)/gaussian_copula_approaches.py
Test/Copula (WIP)/test_icdf_patch.py
Test/Copula (WIP)/test_inference.py
Test/Copula (WIP)/test_mock.py
Test/DP-VAE (WIP)/perfect_dp_mixture.py
Test/GMM (WIP)/compare.py
Test/GMM (WIP)/ggmm_BF.py
Test/HGAM (WIP)/benchmark_hgam_BF.py
Test/HGAM (WIP)/gam_utils.py
Test/HGAM (WIP)/plot_hgam_comparison.py
Test/HGAM (WIP)/test_native_gam.py
Test/Modeling Evolutionary Heterogeneity (WIP)/compare_3way_beast.py
Test/Modeling Evolutionary Heterogeneity (WIP)/compare_beast_BF.py
Test/Modeling Evolutionary Heterogeneity (WIP)/compare_bl_beast_equivalence.py
Test/Modeling Evolutionary Heterogeneity (WIP)/compare_estimations.py
Test/Modeling Evolutionary Heterogeneity (WIP)/compare_posteriors.py
Test/Modeling Evolutionary Heterogeneity (WIP)/compare_posteriors_blmarg.py
Test/Modeling Evolutionary Heterogeneity (WIP)/create_xmls.py
Test/Modeling Evolutionary Heterogeneity (WIP)/tree_data.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_1_Spatial_Heterogeneity/fit_BF_gamma.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_1_Spatial_Heterogeneity/fit_BF_gamma_fixed.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_1_Spatial_Heterogeneity/fit_BF_gamma_fixed2.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_1_Spatial_Heterogeneity/fit_BF_gamma_fixed3.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_1_Spatial_Heterogeneity/fit_BF_gamma_vec.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_1_Spatial_Heterogeneity/parse_trees.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_2_Temporal_Heterogeneity/fit_BF_ucln.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_2_Temporal_Heterogeneity/fit_BF_ucln_vec.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_3_Spatial_BLMarg/fit_BF_gamma_blmarg.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_4_Temporal_BLMarg/fit_BF_ucln_blmarg.py
Test/Modeling Evolutionary Heterogeneity (WIP)/scripts/check_vectorization_logic.py
Test/Modeling Evolutionary Heterogeneity (WIP)/scripts/generate_xtx_log.py
Test/Modeling Evolutionary Heterogeneity (WIP)/scripts/load_data.py
Test/Modeling Evolutionary Heterogeneity (WIP)/scripts/tree_6.py
Test/Modeling Evolutionary Heterogeneity (WIP)/scripts/tree_data.py
Test/R2D2 (WIP)/run_r2d2_test.py
Test/Shard  (WIP)/benchmark_shard.py
Test/Shard  (WIP)/cpu_shard.py
Test/Shard  (WIP)/gpu_shard.py
Test/Shard  (WIP)/hierarchical_shard.py
Test/Shard  (WIP)/sharding_safeguards.py
Test/Shard  (WIP)/test_backward_collective.py
Test/Shard  (WIP)/test_backward_srm_real.py
Test/Shard  (WIP)/test_posterior_agreement.py
Test/Shard  (WIP)/test_sharding_safeguards.py
Test/Shard  (WIP)/time_shardcheck.py
Test/Shard  (WIP)/viz_sharding_ops.py
Test/Shard  (WIP)/manual_ops/manual_shard.py
Test/Shard  (WIP)/manual_ops/test_manual_ops.py
Test/Shard  (WIP)/mesh2d/bench_4chain.py
Test/Shard  (WIP)/mesh2d/bench_bigN.py
Test/Shard  (WIP)/mesh2d/bench_dyadshard.py
Test/Shard  (WIP)/mesh2d/bench_mesh2d.py
Test/Shard  (WIP)/mesh2d/mesh2d_nuts.py
Test/Trait coevolution and causal inference (WIP)/examples/compare_posteriors.py
Test/Trait coevolution and causal inference (WIP)/examples/gdpm_core.py
Test/Trait coevolution and causal inference (WIP)/examples/plot_posteriors.py
Test/Trait coevolution and causal inference (WIP)/examples/benchmark/run_benchmark.py
Test/Trait coevolution and causal inference (WIP)/examples/cichlid/bf/bench_expm.py
Test/Trait coevolution and causal inference (WIP)/examples/cichlid/bf/bench_grad.py
Test/Trait coevolution and causal inference (WIP)/examples/cichlid/bf/bench_model.py
Test/Trait coevolution and causal inference (WIP)/examples/cichlid/bf/bench_solve.py
Test/Trait coevolution and causal inference (WIP)/examples/cichlid/bf/cichlid_bf.py
Test/Trait coevolution and causal inference (WIP)/examples/cichlid/bf/gdpm_core.py
Test/Trait coevolution and causal inference (WIP)/examples/cichlid/bf/profile_core.py
Test/Trait coevolution and causal inference (WIP)/examples/cichlid/bf/test_core.py
Test/Trait coevolution and causal inference (WIP)/examples/primates/bf/primates_bf.py
Test/Trait coevolution and causal inference (WIP)/examples/primates/bf/primates_bf_mask.py
Test/VINE (WIP)/__init__.py
Test/VINE (WIP)/data_parser.py
Test/VINE (WIP)/decoder.py
Test/VINE (WIP)/embeddings.py
Test/VINE (WIP)/likelihood.py
Test/VINE (WIP)/optimizer.py
Test/VINE (WIP)/validation.py
Test/Workflow  (WIP)/workflow.py