CITATION.cff
LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
src/celldn/__init__.py
src/celldn/cli.py
src/celldn/io.py
src/celldn/pipeline.py
src/celldn/retrieval.py
src/celldn/runtime_logging.py
src/celldn.egg-info/PKG-INFO
src/celldn.egg-info/SOURCES.txt
src/celldn.egg-info/dependency_links.txt
src/celldn.egg-info/entry_points.txt
src/celldn.egg-info/requires.txt
src/celldn.egg-info/top_level.txt
src/celldn/mics/output_display.py
src/celldn/mics/pubtator3_celldn_display.py
src/celldn/normalization/__init__.py
src/celldn/normalization/abbreviations.py
src/celldn/normalization/linker.py
src/celldn/normalization/ontology.py
src/celldn/normalization/stemmer.py
src/celldn/recognition/__init__.py
src/celldn/recognition/bioc.py
src/celldn/recognition/hf_utils.py
src/celldn/recognition/ner_common.py
src/celldn/recognition/predict.py
src/celldn/resources/abbreviations.tsv
src/celldn/resources/cell_ontology_v2025-12-17.jsonl