Metadata-Version: 2.1
Name: karyopype
Version: 0.1.4
Summary: Chromosomal visualization in Python.
Home-page: http://github.com/jakevc/karyopype
Author: Jake VanCampen
Author-email: jake.vancampen7@gmail.com
License: MIT
Keywords: Bioinformatics
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Other Environment
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Topic :: Scientific/Engineering
Description-Content-Type: text/markdown
Requires-Dist: matplotlib
Requires-Dist: pandas
Requires-Dist: numpy

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# karyopype

Karyopype is a simple chromosome plotting package in python allowing you to quickly visualize where a set of genomic regions, or multiple sets of genomic regions fall on the chromosomes.


From an interactive python session (jupyter notebook):
```python
pip install karyopype
import karyopype.karyopype as kp

kp.plot_karyopype("hg38", "/path/to/regions.bed")
```

![](karyopype/data/hg38_karyopype.png)

From a command line session
```python
pip install karyopype
python
>>> import karyopype.karyopype as kp
# save plot to current directory
>>> kp.plot_karyopyp("hg38", "/path/to/regions.bed", savefig=True)
```

