Metadata-Version: 2.1
Name: pyroglancer
Version: 0.0.4
Summary: Pythonic interface to neuroglancer for displaying neuronal and synaptic data
Home-page: https://github.com/SridharJagannathan/pyroglancer
Author: Sridhar Jagannathan
Author-email: j.sridharrajan@gmail.com
License: BSD (3-clause)
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Natural Language :: English
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Requires-Dist: neuroglancer (>=2.15)
Requires-Dist: python-catmaid (>=2.0.2)
Requires-Dist: navis (>=0.5.1)
Requires-Dist: numpy (>=1.16)
Requires-Dist: json5 (>=0.9.5)
Requires-Dist: cloud-volume
Requires-Dist: webcolors (>=1.3)
Requires-Dist: pyyaml
Requires-Dist: nglui (>=2.4.0)
Requires-Dist: more-itertools
Requires-Dist: open3d
Requires-Dist: scikit-image

[![Build Status](https://www.travis-ci.com/SridharJagannathan/pyroglancer.svg?branch=master)](https://www.travis-ci.com/SridharJagannathan/pyroglancer) [![Coverage Status](https://coveralls.io/repos/github/SridharJagannathan/pyroglancer/badge.svg?branch=master)](https://coveralls.io/github/SridharJagannathan/pyroglancer?branch=master) [![PyPI version](https://badge.fury.io/py/pyroglancer.svg)](https://badge.fury.io/py/pyroglancer)

![image](https://github.com/SridharJagannathan/pyroglancer/raw/master/docs/_static/pyroglancer_logo.png)

Pythonic interface to neuroglancer for displaying neuronal data like
neurons, synapses, meshes (surfaces, volumes), annotations (points) in
the precomputed format.

Installation
============

The easiest way to install the package is via `pip`:

    $ pip3 install pyroglancer

The easiest way to install the latest developments from `GitHub` is:

    $ pip3 install git+git://github.com/SridharJagannathan/pyroglancer@master

Documentation
=============

<https://SridharJagannathan.github.io/pyroglancer>

Features
========

-   Fetch and display neurons from the hemibrain, FAFB dataset
-   Display synapse annotations etc

Acknowledgements
================

Thanks to [Jeremy Maitin-Shepard](https://github.com/jbms) from google
for inventing the precomputed format and answering many of my queries. The pyroglancer
logo was inspired from [PyPy](https://www.pypy.org/). The pyroglancer critically depends on
packages like [NAVis](https://github.com/schlegelp/navis) for interfacing with neuron data.

Copyright & License
===================

Copyright (c) 2021, [Sridhar Jagannathan](https://github.com/SridharJagannathan).
3-clause BSD License.


