.coveragerc
.gitignore
.readthedocs.yml
AUTHORS.rst
CHANGELOG.rst
CONTRIBUTING.rst
LICENSE.txt
README.rst
perez.params.txt
pyproject.toml
setup.cfg
setup.py
sim.params.txt
tox.ini
yazar.params.txt
config/config.yaml
docs/Makefile
docs/authors.rst
docs/changelog.rst
docs/conf.py
docs/contributing.rst
docs/index.rst
docs/license.rst
docs/readme.rst
docs/requirements.txt
docs/_static/.gitignore
envs/environment.yaml
src/CIGMA.egg-info/PKG-INFO
src/CIGMA.egg-info/SOURCES.txt
src/CIGMA.egg-info/dependency_links.txt
src/CIGMA.egg-info/not-zip-safe
src/CIGMA.egg-info/requires.txt
src/CIGMA.egg-info/top_level.txt
src/cigma/__init__.py
src/cigma/fit.py
src/cigma/log.py
src/cigma/plot.py
src/cigma/preprocess.py
src/cigma/reml.R
src/cigma/skeleton.py
src/cigma/util.py
src/cigma/wald.py
tests/conftest.py
tests/sim.npy
tests/test.py
tests/test_skeleton.py
workflow/Snakefile
workflow/bin/mergeBatches.py
workflow/bin/perez/gene_location.py
workflow/bin/perez/he.free.meta.py
workflow/bin/perez/he.py
workflow/bin/perez/he.togz.py
workflow/bin/sim/celltype_expectedPInSnBETAnVnW.py
workflow/bin/sim/gcta_greml_ctp.py
workflow/bin/sim/generatedata.py
workflow/bin/sim/he.py
workflow/bin/utils/get_biomart_v75.R
workflow/bin/yazar/cell_dist.py
workflow/bin/yazar/gcta_greml_op.py
workflow/bin/yazar/gene_location.py
workflow/bin/yazar/he.py
workflow/bin/yazar/he.togz.py
workflow/bin/yazar/kinship.npy.py
workflow/bin/yazar/kinship.py
workflow/bin/yazar/kinship.split.py
workflow/bin/yazar/ldsc.h2_cts.py
workflow/bin/yazar/ldscperct.partition_summary.stacked.py
workflow/bin/yazar/pca.py
workflow/bin/yazar/rm_rareINDnCT.py
workflow/bin/yazar/sim.he.free.py
workflow/bin/yazar/sim.transform.py
workflow/bin/yazar/transform.py
workflow/bin/yazar/varNU_dist.py
workflow/notebook/fig2.ipynb
workflow/notebook/fig3.ipynb
workflow/notebook/fig4.ipynb
workflow/notebook/fig5.ipynb
workflow/rules/common.smk
workflow/rules/perez.smk
workflow/rules/sim.smk
workflow/rules/yazar.smk
workflow/rules/yazar_sim.smk