Metadata-Version: 2.1
Name: yunguanfu-mil3id2019
Version: 0.0.1
Summary: Implements Yunguan Fu's MIL3ID paper presented at MICCAI 2019
Home-page: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/yunguanfu-mil3id2019
Author: Yunguan Fu
Author-email: yunguan.fu.18@ucl.ac.uk
License: BSD-3 license
Keywords: medical imaging
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Healthcare Industry
Classifier: Intended Audience :: Information Technology
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Description-Content-Type: text/x-rst
Requires-Dist: six (>=1.10)
Requires-Dist: numpy (>=1.11)

yunguanfu-mil3id2019
===============================

.. image:: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/yunguanfu-mil3id2019/raw/master/project-icon.png
   :height: 128px
   :width: 128px
   :target: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/yunguanfu-mil3id2019
   :alt: Logo

.. image:: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/yunguanfu-mil3id2019/badges/master/build.svg
   :target: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/yunguanfu-mil3id2019/pipelines
   :alt: GitLab-CI test status

.. image:: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/yunguanfu-mil3id2019/badges/master/coverage.svg
    :target: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/yunguanfu-mil3id2019/commits/master
    :alt: Test coverage

.. image:: https://readthedocs.org/projects/yunguanfu-mil3id2019/badge/?version=latest
    :target: http://yunguanfu-mil3id2019.readthedocs.io/en/latest/?badge=latest
    :alt: Documentation Status



Author: Yunguan Fu

yunguanfu-mil3id2019 is part of the `SNAPPY`_ software project, developed at the `Wellcome EPSRC Centre for Interventional and Surgical Sciences`_, part of `University College London (UCL)`_.

yunguanfu-mil3id2019 supports Python 3.6.

yunguanfu-mil3id2019 is currently a demo project, which will add/multiply two numbers. Example usage:

::

    python yfmil3id2019_train.py -x 5 -y 8
    python yfmil3id2019_train.py -x 3 -y 6 --multiply

Please explore the project structure, and implement your own functionality.

Developing
----------

Cloning
^^^^^^^

You can clone the repository using the following command:

::

    git clone https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/yunguanfu-mil3id2019


Running tests
^^^^^^^^^^^^^
Pytest is used for running unit tests:
::

    pip install pytest
    python -m pytest


Linting
^^^^^^^

This code conforms to the PEP8 standard. Pylint can be used to analyse the code:

::

    pip install pylint
    pylint --rcfile=tests/pylintrc yfmil3id2019


Installing
----------

You can pip install directly from the repository as follows:

::

    pip install git+https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/SNAPPY/yunguanfu-mil3id2019



Contributing
^^^^^^^^^^^^

Please see the `contributing guidelines`_.


Useful links
^^^^^^^^^^^^

* `Source code repository`_
* `Documentation`_


Licensing and copyright
-----------------------

Copyright 2019 University College London.
yunguanfu-mil3id2019 is released under the BSD-3 license. Please see the `license file`_ for details.


Acknowledgements
----------------

Supported by `Wellcome`_ and `EPSRC`_.


.. _`Wellcome EPSRC Centre for Interventional and Surgical Sciences`: http://www.ucl.ac.uk/weiss
.. _`source code repository`: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/yunguanfu-mil3id2019
.. _`Documentation`: https://yunguanfu-mil3id2019.readthedocs.io
.. _`SNAPPY`: https://weisslab.cs.ucl.ac.uk/WEISS/PlatformManagement/SNAPPY/wikis/home
.. _`University College London (UCL)`: http://www.ucl.ac.uk/
.. _`Wellcome`: https://wellcome.ac.uk/
.. _`EPSRC`: https://www.epsrc.ac.uk/
.. _`contributing guidelines`: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/yunguanfu-mil3id2019/blob/master/CONTRIBUTING.rst
.. _`license file`: https://weisslab.cs.ucl.ac.uk/WEISS/SoftwareRepositories/yunguanfu-mil3id2019/blob/master/LICENSE



