.gitattributes
.gitignore
.pre-commit-config.yaml
Dockerfile.test
LICENSE
MANIFEST.in
README.md
VERSION
pyproject.toml
setup.cfg
tox.ini
.github/CODEOWNERS
.github/pull_request_template.md
.github/workflows/publish.yaml
.github/workflows/quality.yaml
.github/workflows/test.yaml
efaar_benchmarking/__init__.py
efaar_benchmarking/benchmarking.py
efaar_benchmarking/constants.py
efaar_benchmarking/core.py
efaar_benchmarking/data_loading.py
efaar_benchmarking/efaar.py
efaar_benchmarking/utils.py
efaar_benchmarking.egg-info/PKG-INFO
efaar_benchmarking.egg-info/SOURCES.txt
efaar_benchmarking.egg-info/dependency_links.txt
efaar_benchmarking.egg-info/requires.txt
efaar_benchmarking.egg-info/top_level.txt
efaar_benchmarking/benchmark_annotations/CORUM.txt
efaar_benchmarking/benchmark_annotations/HuMAP.txt
efaar_benchmarking/benchmark_annotations/LICENSE
efaar_benchmarking/benchmark_annotations/Reactome.txt
efaar_benchmarking/benchmark_annotations/SIGNOR.txt
efaar_benchmarking/benchmark_annotations/StringDB.txt
notebooks/jump_map_building.ipynb
notebooks/replogle_map_building.ipynb
notebooks/data/centromeres_hg38.tsv
notebooks/data/crispr.csv.gz
notebooks/data/hg38_cytoband.tsv.gz
notebooks/data/hg38_scaffolds.tsv
notebooks/data/ncbirefseq_hg38.tsv.gz
notebooks/data/plate.csv.gz
notebooks/data/u2os.csv
notebooks/data/well.csv.gz
requirements/.gitkeep
requirements/dev_3.10.txt
requirements/dev_3.11.txt
requirements/dev_3.8.txt
requirements/dev_3.9.txt
requirements/main_3.10.txt
requirements/main_3.11.txt
requirements/main_3.8.txt
requirements/main_3.9.txt
tests/__init__.py
tests/test_core.py