# Python environments, caches, coverage, and packages
__pycache__/
*.py[cod]
.venv/
.coverage
htmlcov/
.mypy_cache/
.pytest_cache/
.ruff_cache/
lightning_logs/
build/
dist/
*.egg-info/

# Local operating-system and editor state
.DS_Store
.idea/
.vscode/
*~
*.swp

# Local data, downloaded models, checkpoints, and generated output
data/
downloaded-models/
checkpoints/
tmp/
output/
docs/_build/

# Genomic indexes belong beside uncommitted source data
*.csi
*.tbi
