Metadata-Version: 2.1
Name: corgie
Version: 0.1.1
Summary: Connectomics Registration General Inference Engine
Home-page: https://github.com/supersergiy/corgie
Author: Sergiy Popovych
Author-email: sergiy.popovich@gmail.com
License: UNKNOWN
Platform: UNKNOWN
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: sphinx-click
Requires-Dist: torchfields
Requires-Dist: torch
Requires-Dist: gevent
Requires-Dist: torchvision
Requires-Dist: numpy
Requires-Dist: six
Requires-Dist: pyyaml
Requires-Dist: mazepa (>=0.1.1)
Requires-Dist: modelhouse (>=0.1.2)
Requires-Dist: click-option-group
Requires-Dist: click (<8,>=7)
Requires-Dist: procspec
Requires-Dist: idna (>=2.5)
Requires-Dist: google-auth (>=1.11.0)
Requires-Dist: cloud-volume
Requires-Dist: scikit-image
Requires-Dist: h5py
Requires-Dist: kimimaro
Requires-Dist: docutils (<0.18)
Requires-Dist: cloud-files

# COnnectomics Registration Generalizable Inference Engine (corgie)

Welcome to corgie! corgie is a command line tool built for registration of very large 3D volumes.

# Installation

```
pip install corgie
```

# Example 

```
corgie copy \
--src_layer_spec '{
   "name": "unaligned",
   "path": "https://s3-hpcrc.rc.princeton.edu/minnie65-phase3-em/unaligned"
   }' \
--src_layer_spec '{
   "name": "large_folds",
   "type": "mask",
   "path": "gs://seunglab_minnie_phase3/alignment/unaligned_fold_lengths/threshold_350"
   }' \
--dst_folder "gs://corgie/demo/my_first_stack" \
--start_coord "150000, 150000, 17000" \
--end_coord "250000, 250000, 17020" \
--mip 6 \
--chunk_xy 1024 --chunk_z 1
```

# Documentation
[Link](https://corgie.readthedocs.io/en/latest/)


