Metadata-Version: 2.1
Name: genomenotebook
Version: 1.0.0
Summary: A genome browser in your Jupyter notebook
Home-page: https://github.com/dbikard/genomenotebook
Author: David Bikard
Author-email: dbikard@pasteur.fr
License: Apache Software License 2.0
Keywords: nbdev jupyter notebook python
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: License :: OSI Approved :: Apache Software License
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy>=1.23.5
Requires-Dist: biopython>=1.78
Requires-Dist: pandas>=1.5.3
Requires-Dist: bokeh<3.3.0,>=3.1.0
Requires-Dist: fastcore
Requires-Dist: jupyter
Requires-Dist: selenium
Requires-Dist: svgutils
Requires-Dist: chromedriver_binary
Provides-Extra: dev
Requires-Dist: pyBigWig; extra == "dev"



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# GenomeNotebook (1.0.0)

> A genome browser in your Jupyter notebook

## Install

``` bash
pip install genomenotebook
```

#### Upgrade

New versions of genomenotebook are released on a regular basis. Make
sure to upgrade your installation to enjoy all the features.

``` bash
pip install genomenotebook --upgrade
```

## How to use

Create a simple genome browser with a search bar. The sequence appears
when zooming in.

Tracks can be added to visualize your favorite genomics data. See
[Examples](https://dbikard.github.io/genomenotebook/examples.html) for
more !!!!

``` python
import genomenotebook as gn
```

``` python
g=gn.GenomeBrowser(gff_path=gff_path, fasta_path=fasta_path, init_pos=10000, bounds=(0,100000))
g.show()
```

## Documentation

<https://dbikard.github.io/genomenotebook/>
