.gitignore
LICENSE
README.md
setup.py
benchmarks/benchmark_comands.txt
example/1-build-database.sh
example/2-search-database.sh
example/bagel.fa
google_colabs/Embed_sequences_using_TM_Vec.ipynb
google_colabs/Load_TM_Vec_embeddings.ipynb
google_colabs/Search_use_TM_Vec_search_to_search_for_related_sequences.ipynb
google_colabs/Use_TM_Vec_to_predict_TM_Scores_for_pairs_of_sequences.ipynb
ipynb/repo_EMBED.ipynb
ipynb/repo_SEARCH.ipynb
ipynb/repo_TM.ipynb
ipynb/speed_test.ipynb
ipynb/.ipynb_checkpoints/repo_EMBED-checkpoint.ipynb
scripts/build-fasta-index
scripts/tmvec-build-database
scripts/tmvec-search
tm_vec/__init__.py
tm_vec/config.py
tm_vec/data_embed_structure.py
tm_vec/embed_structure_model.py
tm_vec/fasta.py
tm_vec/launch_pl_worker_embed_structure.bash
tm_vec/pl_worker_embed_structure.bash
tm_vec/tm_vec_utils.py
tm_vec/train_embed_structure_model.py
tm_vec/utils.py
tm_vec.egg-info/PKG-INFO
tm_vec.egg-info/SOURCES.txt
tm_vec.egg-info/dependency_links.txt
tm_vec.egg-info/requires.txt
tm_vec.egg-info/top_level.txt
tm_vec/tests/test_fasta.py