.gitignore
.readthedocs.yml
CONTRIBUTING.md
LICENSE
README.md
pyproject.toml
requirements.txt
setup.py
.github/workflows/draft-pdf.yml
.github/workflows/test-pytest.yml
docs/Makefile
docs/source/api_reference.rst
docs/source/changelog.rst
docs/source/cli.rst
docs/source/conf.py
docs/source/how-to-s.rst
docs/source/index.rst
docs/source/issues.rst
docs/source/performance.rst
docs/source/principles.rst
docs/source/quickstart.rst
docs/source/soft-gamma.rst
docs/source/_static/css/custom.css
docs/source/examples/quickstart.py
docs/source/images/alignments.png
docs/source/images/best_alignment.png
docs/source/images/cmpsoftshift.png
docs/source/images/cmpsoftsplit.png
docs/source/images/compalignment.png
docs/source/images/continuum.png
docs/source/images/continuum_APS.png
docs/source/images/cst_generated.png
docs/source/images/fastgammaanimation.gif
docs/source/images/logo.odg
docs/source/images/logo.svg
docs/source/images/not_soft_alignment.png
docs/source/images/soft_alignment.png
docs/source/images/time2annotators.png
docs/source/images/time3annotators.png
docs/source/images/windowestimation.png
notebooks/Example.ipynb
notebooks/benchmarking.ipynb
paper/best_alignment.png
paper/continuum.png
paper/paper.bib
paper/paper.md
pygamma_agreement/__init__.py
pygamma_agreement/alignment.py
pygamma_agreement/cli_apps.py
pygamma_agreement/continuum.py
pygamma_agreement/cst.py
pygamma_agreement/dissimilarity.py
pygamma_agreement/notebook.py
pygamma_agreement/numba_utils.py
pygamma_agreement/sampler.py
pygamma_agreement.egg-info/PKG-INFO
pygamma_agreement.egg-info/SOURCES.txt
pygamma_agreement.egg-info/dependency_links.txt
pygamma_agreement.egg-info/entry_points.txt
pygamma_agreement.egg-info/requires.txt
pygamma_agreement.egg-info/top_level.txt
tests/__init__.py
tests/test_alignement.py
tests/test_cli.py
tests/test_continuum.py
tests/test_cst.py
tests/test_dissimilarity.py
tests/test_edge_case.py
tests/test_fast_gamma.py
tests/test_gammas.py
tests/test_sampler.py
tests/test_soft.py
tests/test_units.py
tests/data/2by1000.csv
tests/data/2by2000.csv
tests/data/2by5000.csv
tests/data/3by100.csv
tests/data/3by500.csv
tests/data/5by100.csv
tests/data/AlexPaulSuzan.csv
tests/data/MaureenMarvinRobin.TextGrid
tests/data/MaureenMarvinRobin.eaf
tests/data/annotation_dalton.csv
tests/data/annotation_paul_suzann_alex.csv
tests/data/annotation_paul_suzann_alex_additional_unit.csv
tests/data/annotation_paul_suzann_alex_almost_same.csv
tests/data/annotation_paul_suzann_alex_single_unit_cat.csv
tests/data/annotation_paul_suzann_alex_single_unit_temp.csv
tests/data/example_figure10.csv
tests/data/example_figure19.csv
tests/data/null_disorder.csv