LICENSE
README.md
pyproject.toml
src/rbfe_network_map.egg-info/PKG-INFO
src/rbfe_network_map.egg-info/SOURCES.txt
src/rbfe_network_map.egg-info/dependency_links.txt
src/rbfe_network_map.egg-info/entry_points.txt
src/rbfe_network_map.egg-info/requires.txt
src/rbfe_network_map.egg-info/top_level.txt
src/rbfenetmap/__init__.py
src/rbfenetmap/cli/__init__.py
src/rbfenetmap/cli/_args.py
src/rbfenetmap/cli/commands.py
src/rbfenetmap/cli/main.py
src/rbfenetmap/core/__init__.py
src/rbfenetmap/core/align.py
src/rbfenetmap/core/cbfe.py
src/rbfenetmap/core/clustering.py
src/rbfenetmap/core/consistency.py
src/rbfenetmap/core/coreprune.py
src/rbfenetmap/core/cost.py
src/rbfenetmap/core/descriptors.py
src/rbfenetmap/core/design.py
src/rbfenetmap/core/diagnostics.py
src/rbfenetmap/core/exceptions.py
src/rbfenetmap/core/intermediates.py
src/rbfenetmap/core/kabsch.py
src/rbfenetmap/core/mcs.py
src/rbfenetmap/core/models.py
src/rbfenetmap/core/molgraph.py
src/rbfenetmap/core/options.py
src/rbfenetmap/core/pairs.py
src/rbfenetmap/core/pipeline.py
src/rbfenetmap/core/pluginregistry.py
src/rbfenetmap/core/posing.py
src/rbfenetmap/core/replanning.py
src/rbfenetmap/core/softcore.py
src/rbfenetmap/core/surgery.py
src/rbfenetmap/core/validate.py
src/rbfenetmap/core/meta/__init__.py
src/rbfenetmap/core/meta/exporters.py
src/rbfenetmap/core/meta/intermediates.py
src/rbfenetmap/core/meta/mappers.py
src/rbfenetmap/core/meta/planners.py
src/rbfenetmap/core/meta/scorers.py
src/rbfenetmap/gui/__init__.py
src/rbfenetmap/gui/cache.py
src/rbfenetmap/gui/schema.py
src/rbfenetmap/gui/server.py
src/rbfenetmap/gui/session.py
src/rbfenetmap/gui/static/app.css
src/rbfenetmap/gui/static/app.js
src/rbfenetmap/gui/static/index.html
src/rbfenetmap/io/__init__.py
src/rbfenetmap/io/amber_masks.py
src/rbfenetmap/io/loaders.py
src/rbfenetmap/io/networkio.py
src/rbfenetmap/plugins/exporters/__init__.py
src/rbfenetmap/plugins/exporters/amber_exporter.py
src/rbfenetmap/plugins/exporters/basic_exporters.py
src/rbfenetmap/plugins/exporters/html_exporter.py
src/rbfenetmap/plugins/intermediates/__init__.py
src/rbfenetmap/plugins/intermediates/_rgroups.py
src/rbfenetmap/plugins/intermediates/fragment_swap.py
src/rbfenetmap/plugins/intermediates/pairmap_generator.py
src/rbfenetmap/plugins/mappers/__init__.py
src/rbfenetmap/plugins/mappers/cartograph_mapper.py
src/rbfenetmap/plugins/mappers/identity_mapper.py
src/rbfenetmap/plugins/mappers/kartograf_mapper.py
src/rbfenetmap/plugins/mappers/mcss_mapper.py
src/rbfenetmap/plugins/planners/__init__.py
src/rbfenetmap/plugins/planners/mst_planner.py
src/rbfenetmap/plugins/planners/optimal_planner.py
src/rbfenetmap/plugins/planners/simple_planners.py
src/rbfenetmap/plugins/scorers/__init__.py
src/rbfenetmap/plugins/scorers/linear_scorer.py
src/rbfenetmap/plugins/scorers/lomaplike_scorer.py
src/rbfenetmap/plugins/scorers/softcore_size_scorer.py
src/rbfenetmap/plugins/scorers/variance_scorer.py
src/rbfenetmap/viz/__init__.py
src/rbfenetmap/viz/depict.py
src/rbfenetmap/viz/gallery.py
src/rbfenetmap/viz/network_svg.py
tests/test_align.py
tests/test_cbfe.py
tests/test_clustering.py
tests/test_compat.py
tests/test_consistency.py
tests/test_design.py
tests/test_diagnostics.py
tests/test_gui_cache.py
tests/test_gui_schema.py
tests/test_gui_server.py
tests/test_intermediate_exports.py
tests/test_intermediate_wiring.py
tests/test_intermediates.py
tests/test_io_and_cli.py
tests/test_kabsch.py
tests/test_mcs_hydrogens.py
tests/test_models.py
tests/test_optimal_planner.py
tests/test_pairmap.py
tests/test_planners.py
tests/test_plugins.py
tests/test_reject_depictions.py
tests/test_repair_comparison.py
tests/test_replanning.py
tests/test_scorers.py
tests/test_smoke.py
tests/test_softcore.py
tests/test_stranded_core.py
tests/test_surgery.py