.gitignore
Dockerfile
Makefile
README.md
docker-compose.yml
main.py
make.bat
mkdocs.yml
pyproject.toml
requirements.txt
zensical.toml
.github/workflows/docs.yml
.github/workflows/publish.yml
assets/lookups/ICD10.csv
assets/lookups/README.md
assets/lookups/res195.csv
config/data_config.yaml
config/eval_config.yaml
config/icd_config.yaml
config/local_feature_config.yaml
config/multi_code_search.yaml
config/threshold_config.yaml
docs/00-getting-started.md
docs/01-data-generation.md
docs/02-feature-building.md
docs/03-pipeline-execution.md
docs/04-pipeline-evaluation.md
docs/05-pipeline-validation.md
docs/06-azure-ml-guide.md
docs/07-local-feature-development.md
docs/api-reference.md
docs/index.md
docs/api/index.md
docs/api/phenotypes.md
docs/api/scores.md
docs/html/00_architecture_docs.html
docs/html/01_data_generation_docs.html
docs/html/02_feature_building_docs.html
docs/html/03_pipeline_execution_docs.html
docs/html/04_pipeline_evaluation_docs.html
docs/html/05_validation_docs.html
docs/html/index.html
docs/html/style.css
docs/html/theme-engine.js
docs/stylesheets/api-custom.css
local/__init__.py
local/config/local_feature_config.yaml
local/features/__init__.py
local/features/stress.py
local/scores/__init__.py
local/scores/triage.py
local/tests/__init__.py
local/tests/test_local_logic.py
local/tests/test_pipeline_integration.py
notebooks/feature_sandbox.ipynb
src/__init__.py
src/icare_risk/__init__.py
src/icare_risk/features.py
src/icare_risk/generators.py
src/icare_risk/metrics.py
src/icare_risk/phenotypes.py
src/icare_risk/scores.py
src/icare_risk/utils.py
src/icare_risk.egg-info/PKG-INFO
src/icare_risk.egg-info/SOURCES.txt
src/icare_risk.egg-info/dependency_links.txt
src/icare_risk.egg-info/entry_points.txt
src/icare_risk.egg-info/requires.txt
src/icare_risk.egg-info/scm_file_list.json
src/icare_risk.egg-info/scm_version.json
src/icare_risk.egg-info/top_level.txt
src/icare_risk/config/__init__.py
src/icare_risk/config/code_search.yaml
src/icare_risk/config/data_config.yaml
src/icare_risk/config/eval_config.yaml
src/icare_risk/config/feature_config.yaml
src/icare_risk/config/threshold_config.yaml
src/icare_risk/db/__init__.py
src/icare_risk/db/_raw_sql.py
src/icare_risk/db/_sqlalchemy_core.py
src/icare_risk/db/connection.py
src/icare_risk/db/download.py
src/icare_risk/db/fetch.py
src/icare_risk/scripts/__init__.py
src/icare_risk/scripts/a_generate_data.py
src/icare_risk/scripts/b_build_features_icare.py
src/icare_risk/scripts/c_evaluate_scores.py
src/icare_risk/scripts/d_evaluate_thresholds.py
src/icare_risk/scripts/e_validate_scores.py
src/icare_risk/scripts/f_find_clinical_codes.py
src/icare_risk/scripts/g_sandbox.py
src/icare_risk/tests/fixtures/cases.csv
src/icare_risk/tests/fixtures/icare/icare_episodes_anon.csv
src/icare_risk/tests/fixtures/icare/icare_microbiology_anon.csv
src/icare_risk/tests/fixtures/icare/icare_pathology_blood_anon.csv
src/icare_risk/tests/fixtures/icare/icare_pharmacy_prescribing_anon.csv
src/icare_risk/tests/fixtures/icare/icare_problems_anon.csv
src/icare_risk/tests/fixtures/icare/icare_vital_signs_anon.csv
tests/cases.csv
tests/test_config_merge.py
tests/test_generators.py
tests/test_phenotypes.py
tests/test_run.py
tests/test_scores.py
tests/test_scripts.py
tests/verify_pipeline.py
tests/fixtures/icare_episodes_anon.csv
tests/fixtures/icare_microbiology_anon.csv
tests/fixtures/icare_pathology_blood_anon.csv
tests/fixtures/icare_pharmacy_prescribing_anon.csv
tests/fixtures/icare_problems_anon.csv
tests/fixtures/icare_vital_signs_anon.csv
tests/fixtures/outputs/test_results_check.csv
tutorials/01_generating_synthetic_data.ipynb
tutorials/02_building_features_from_config.ipynb
tutorials/03_phenotyping_and_scoring.ipynb