@article{Virshup_2023,
	doi = {10.1038/s41587-023-01733-8},
	url = {https://doi.org/10.1038%2Fs41587-023-01733-8},
	year = 2023,
	month = {apr},
	publisher = {Springer Science and Business Media {LLC}},
	author = {Isaac Virshup and Danila Bredikhin and Lukas Heumos and Giovanni Palla and Gregor Sturm and Adam Gayoso and Ilia Kats and Mikaela Koutrouli and Philipp Angerer and Volker Bergen and Pierre Boyeau and Maren Büttner and Gokcen Eraslan and David Fischer and Max Frank and Justin Hong and Michal Klein and Marius Lange and Romain Lopez and Mohammad Lotfollahi and Malte D. Luecken and Fidel Ramirez and Jeffrey Regier and Sergei Rybakov and Anna C. Schaar and Valeh Valiollah Pour Amiri and Philipp Weiler and Galen Xing and Bonnie Berger and Dana Pe'er and Aviv Regev and Sarah A. Teichmann and Francesca Finotello and F. Alexander Wolf and Nir Yosef and Oliver Stegle and Fabian J. Theis and},
	title = {The scverse project provides a computational ecosystem for single-cell omics data analysis},
	journal = {Nature Biotechnology}
}


@article{Xu2021,
  title = {Probabilistic harmonization and annotation of single‐cell transcriptomics data with deep generative models},
  volume = {17},
  ISSN = {1744-4292},
  url = {http://dx.doi.org/10.15252/msb.20209620},
  DOI = {10.15252/msb.20209620},
  number = {1},
  journal = {Molecular Systems Biology},
  publisher = {Springer Science and Business Media LLC},
  author = {Xu,  Chenling and Lopez,  Romain and Mehlman,  Edouard and Regier,  Jeffrey and Jordan,  Michael I and Yosef,  Nir},
  year = {2021},
  month = jan 
}

@article{Lopez2018,
  title = {Deep generative modeling for single-cell transcriptomics},
  volume = {15},
  ISSN = {1548-7105},
  url = {http://dx.doi.org/10.1038/s41592-018-0229-2},
  DOI = {10.1038/s41592-018-0229-2},
  number = {12},
  journal = {Nature Methods},
  publisher = {Springer Science and Business Media LLC},
  author = {Lopez,  Romain and Regier,  Jeffrey and Cole,  Michael B. and Jordan,  Michael I. and Yosef,  Nir},
  year = {2018},
  month = nov,
  pages = {1053–1058}
}

@article{Gayoso2022,
  title = {A Python library for probabilistic analysis of single-cell omics data},
  volume = {40},
  ISSN = {1546-1696},
  url = {http://dx.doi.org/10.1038/s41587-021-01206-w},
  DOI = {10.1038/s41587-021-01206-w},
  number = {2},
  journal = {Nature Biotechnology},
  publisher = {Springer Science and Business Media LLC},
  author = {Gayoso,  Adam and Lopez,  Romain and Xing,  Galen and Boyeau,  Pierre and Valiollah Pour Amiri,  Valeh and Hong,  Justin and Wu,  Katherine and Jayasuriya,  Michael and Mehlman,  Edouard and Langevin,  Maxime and Liu,  Yining and Samaran,  Jules and Misrachi,  Gabriel and Nazaret,  Achille and Clivio,  Oscar and Xu,  Chenling and Ashuach,  Tal and Gabitto,  Mariano and Lotfollahi,  Mohammad and Svensson,  Valentine and da Veiga Beltrame,  Eduardo and Kleshchevnikov,  Vitalii and Talavera-López,  Carlos and Pachter,  Lior and Theis,  Fabian J. and Streets,  Aaron and Jordan,  Michael I. and Regier,  Jeffrey and Yosef,  Nir},
  year = {2022},
  month = feb,
  pages = {163–166}
}
