rdflib>=6.0.0
sparqlwrapper>=2.0.0
pandas>=2.0.0
numpy
bioregistry
linkml>=1.9.1
linkml-runtime>=1.9.0
deprecated>=1.2.13
pyld
more_itertools
tqdm
pyarrow==22.0.0
click
more_click
flask
jupyter
nbconvert
ipykernel

[dev]
ruff

[docs]
sphinx>=8
sphinx-rtd-theme>=3.0
sphinx-click
sphinx-automodapi
plotly>=5.0.0

[notebooks]
matplotlib>=3.10.7
seaborn>=0.11.0
plotly>=5.0.0
networkx>=2.8
jupyterlab>=4.0.0
ipywidgets>=8.0.0
narwhals==2.11.0
plotly==6.4.0

[tests]
pytest
coverage

[web]
flask>=2.0
