[core]
	repositoryformatversion = 0
	filemode = true
	bare = false
	logallrefupdates = true
[remote "origin"]
	fetch = +refs/heads/*:refs/remotes/origin/*
	url = ssh://git@github.com/Phelimb/mccortex.git
[branch "master"]
	remote = origin
	merge = refs/heads/master
[submodule "libs/bcftools"]
	url = https://github.com/samtools/bcftools.git
[submodule "libs/biogrok"]
	url = https://github.com/noporpoise/biogrok.git
[submodule "libs/bioinf-perl"]
	url = https://github.com/noporpoise/bioinf-perl.git
[submodule "libs/bit_array"]
	url = https://github.com/noporpoise/BitArray
[submodule "libs/bwa"]
	url = https://github.com/lh3/bwa.git
[submodule "libs/carrays"]
	url = https://github.com/noporpoise/carrays.git
[submodule "libs/htslib"]
	url = https://github.com/samtools/htslib.git
[submodule "libs/madcrowlib"]
	url = https://github.com/noporpoise/madcrowlib
[submodule "libs/msg-pool"]
	url = https://github.com/noporpoise/msg-pool.git
[submodule "libs/readsim"]
	url = https://github.com/noporpoise/readsim.git
[submodule "libs/samtools"]
	url = https://github.com/samtools/samtools.git
[submodule "libs/seq-align"]
	url = https://github.com/noporpoise/seq-align.git
[submodule "libs/seq_file"]
	url = https://github.com/noporpoise/seq_file.git
[submodule "libs/sort_r"]
	url = https://github.com/noporpoise/sort_r.git
[submodule "libs/string_buffer"]
	url = https://github.com/noporpoise/string_buffer
[submodule "libs/vcfhp"]
	url = https://github.com/noporpoise/vcf-slim
[submodule "libs/xxHash"]
	url = https://github.com/Cyan4973/xxHash.git
