Metadata-Version: 2.1
Name: clehrity
Version: 0.0.1
Summary: Clehrity
Home-page: https://github.com/blengerich/clehrity
License: MIT
Author: Ben Lengerich
Author-email: blengerich@gmail.com
Requires-Python: >=3.9,<4.0
Classifier: Development Status :: 3 - Alpha
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Requires-Dist: anndata (>=0.10.3,<0.11.0)
Requires-Dist: click (>=8.0.1)
Requires-Dist: ebm-utils (>=0.0.3)
Requires-Dist: gam-purification (>=0.0.1,<0.0.2)
Requires-Dist: interpret (>=0.4.4,<0.5.0)
Requires-Dist: pandas-stubs (>=2.1.1.230928,<3.0.0.0)
Requires-Dist: ruptures (>=1.1.8,<2.0.0)
Requires-Dist: tornado (>=6.3.2)
Project-URL: Changelog, https://github.com/blengerich/clehrity/releases
Project-URL: Documentation, https://clehrity.readthedocs.io
Project-URL: Repository, https://github.com/blengerich/clehrity
Description-Content-Type: text/markdown

# Clehrity

[![PyPI](https://img.shields.io/pypi/v/clehrity.svg)][pypi_]
[![Status](https://img.shields.io/pypi/status/clehrity.svg)][status]
[![Python Version](https://img.shields.io/pypi/pyversions/clehrity)][python version]
[![License](https://img.shields.io/pypi/l/clehrity)][license]

[![Read the documentation at https://clehrity.readthedocs.io/](https://img.shields.io/readthedocs/clehrity/latest.svg?label=Read%20the%20Docs)][read the docs]
[![Tests](https://github.com/blengerich/clehrity/workflows/Tests/badge.svg)][tests]
[![Codecov](https://codecov.io/gh/blengerich/clehrity/branch/main/graph/badge.svg)][codecov]

[![pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit&logoColor=white)][pre-commit]
[![Black](https://img.shields.io/badge/code%20style-black-000000.svg)][black]

[pypi_]: https://pypi.org/project/clehrity/
[status]: https://pypi.org/project/clehrity/
[python version]: https://pypi.org/project/clehrity
[read the docs]: https://clehrity.readthedocs.io/
[tests]: https://github.com/blengerich/clehrity/actions?workflow=Tests
[codecov]: https://app.codecov.io/gh/blengerich/clehrity
[pre-commit]: https://github.com/pre-commit/pre-commit
[black]: https://github.com/psf/black

## Features

EHR deconfounding via:

- Statistical tests of discontinuity / non-monotoncities
- Integration with LLMs to find surprising / counter-causal effects

## Requirements

- Python >=3.9

## Installation

You can install _Clehrity_ via [pip] from [PyPI]:

```console
$ pip install clehrity
```

## Usage

Please see the [Command-line Reference] for details.

## Contributing

Contributions are very welcome.
To learn more, see the [Contributor Guide].

## License

Distributed under the terms of the [MIT license][license],
_Clehrity_ is free and open source software.

## Issues

If you encounter any problems,
please [file an issue] along with a detailed description.

## Credits

This project was generated from [@cjolowicz]'s [Hypermodern Python Cookiecutter] template.

[@cjolowicz]: https://github.com/cjolowicz
[pypi]: https://pypi.org/
[hypermodern python cookiecutter]: https://github.com/cjolowicz/cookiecutter-hypermodern-python
[file an issue]: https://github.com/blengerich/clehrity/issues
[pip]: https://pip.pypa.io/

<!-- github-only -->

[license]: https://github.com/blengerich/clehrity/blob/main/LICENSE
[contributor guide]: https://github.com/blengerich/clehrity/blob/main/CONTRIBUTING.md
[command-line reference]: https://clehrity.readthedocs.io/en/latest/usage.html

