AUTHORS.rst
CONTRIBUTING.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
versioneer.py
clarite/__init__.py
clarite/_version.py
clarite.egg-info/PKG-INFO
clarite.egg-info/SOURCES.txt
clarite.egg-info/dependency_links.txt
clarite.egg-info/entry_points.txt
clarite.egg-info/requires.txt
clarite.egg-info/top_level.txt
clarite/cli/__init__.py
clarite/cli/cli.py
clarite/cli/custom_types.py
clarite/cli/parameters.py
clarite/cli/commands/__init__.py
clarite/cli/commands/analyze.py
clarite/cli/commands/describe.py
clarite/cli/commands/load.py
clarite/cli/commands/modify.py
clarite/cli/commands/plot.py
clarite/internal/__init__.py
clarite/internal/calculations.py
clarite/internal/utilities.py
clarite/modules/__init__.py
clarite/modules/describe.py
clarite/modules/load.py
clarite/modules/modify.py
clarite/modules/analyze/__init__.py
clarite/modules/analyze/ewas.py
clarite/modules/analyze/interactions.py
clarite/modules/analyze/utils.py
clarite/modules/analyze/regression/__init__.py
clarite/modules/analyze/regression/base.py
clarite/modules/analyze/regression/glm_regression.py
clarite/modules/analyze/regression/interaction_regression.py
clarite/modules/analyze/regression/r_survey_regression.py
clarite/modules/analyze/regression/weighted_glm_regression.py
clarite/modules/analyze/regression/r_code/__init__.py
clarite/modules/analyze/regression/r_code/ewas_r.R
clarite/modules/analyze/regression/r_code/r_utilities.py
clarite/modules/plot/__init__.py
clarite/modules/plot/distributions.py
clarite/modules/plot/histogram.py
clarite/modules/plot/manhattan.py
clarite/modules/plot/top_results.py
clarite/modules/survey/__init__.py
clarite/modules/survey/survey_design.py
clarite/modules/survey/survey_model.py
clarite/tests/__init__.py
clarite/tests/conftest.py
docs/Makefile
docs/make.bat
docs/source/api.rst
docs/source/citation.rst
docs/source/cli.rst
docs/source/complex_surveys.rst
docs/source/conf.py
docs/source/example.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/motivation.rst
docs/source/regression.rst
docs/source/release-history.rst
docs/source/usage.rst
requirements/requirements-dev.txt
requirements/requirements-rtd.txt
requirements/requirements.txt