.flake8
.readthedocs.yml
.travis.yml
AUTHORS.rst
LICENSE
MANIFEST.in
README.rst
doc8.ini
setup.cfg
setup.py
tox.ini
data/README.rst
data/gmt_files/README.rst
data/gmt_files/concatenated_merge.gmt
data/gmt_files/kegg_geneset_final.gmt
data/gmt_files/merged_geneset_final.gmt
data/gmt_files/msigdb_kegg.gmt
data/gmt_files/msigdb_reactome.gmt
data/gmt_files/reactome_geneset_final.gmt
data/gmt_files/wikipathways_geneset_final.gmt
docs/Makefile
docs/source/cli.rst
docs/source/conf.py
docs/source/constants.rst
docs/source/index.rst
src/pathway_forte/__init__.py
src/pathway_forte/__main__.py
src/pathway_forte/cli.py
src/pathway_forte/constants.py
src/pathway_forte/export_genesets_to_gmt.py
src/pathway_forte/mappings.py
src/pathway_forte/utils.py
src/pathway_forte.egg-info/PKG-INFO
src/pathway_forte.egg-info/SOURCES.txt
src/pathway_forte.egg-info/dependency_links.txt
src/pathway_forte.egg-info/entry_points.txt
src/pathway_forte.egg-info/not-zip-safe
src/pathway_forte.egg-info/requires.txt
src/pathway_forte.egg-info/top_level.txt
src/pathway_forte/pathway_enrichment/__init__.py
src/pathway_forte/pathway_enrichment/functional_class.py
src/pathway_forte/pathway_enrichment/over_representation.py
src/pathway_forte/pathway_enrichment/topology.py
src/pathway_forte/prediction/__init__.py
src/pathway_forte/prediction/binary.py
src/pathway_forte/prediction/multiclass.py
src/pathway_forte/prediction/random_removal.py
src/pathway_forte/prediction/survival.py
tests/__init__.py
tests/test_merge_genesets.py
tests/test_ora.py
tests/data/example.gmt
tests/data/example_fold_changes.csv