.gitignore
setup.py
repair_seq/__init__.py
repair_seq/arrayed_experiment_group.py
repair_seq/base_editor.py
repair_seq/beta_binomial.py
repair_seq/bootstrapper.py
repair_seq/build_guide_specific_targets.py
repair_seq/cluster.py
repair_seq/coherence.py
repair_seq/collapse.py
repair_seq/collapse_cython.pyx
repair_seq/common_sequences.py
repair_seq/convert_outcomes.py
repair_seq/demux.py
repair_seq/demux_arrayed_experiments.py
repair_seq/demux_for_SRA.py
repair_seq/demux_gDNA.py
repair_seq/experiment_group.py
repair_seq/guide_library.py
repair_seq/paired_end_experiment.py
repair_seq/perturb_seq.py
repair_seq/pooled_layout.py
repair_seq/pooled_screen.py
repair_seq/prime_editing_experiment.py
repair_seq/prime_editing_layout.py
repair_seq/quantiles.py
repair_seq/repair-seq
repair_seq/replicates.py
repair_seq/single_end_experiment.py
repair_seq/statistics.py
repair_seq.egg-info/PKG-INFO
repair_seq.egg-info/SOURCES.txt
repair_seq.egg-info/dependency_links.txt
repair_seq.egg-info/requires.txt
repair_seq.egg-info/top_level.txt
repair_seq/test/alignments_for_PE2 screen.bam
repair_seq/test/alignments_for_PE2_screen.bam
repair_seq/test/alignments_for_PE3+50 screen.bam
repair_seq/test/alignments_for_PE3+50_screen.bam
repair_seq/test/build_read_sets.py
repair_seq/test/expected_values_for_PE2 screen.txt
repair_seq/test/expected_values_for_PE2_screen.txt
repair_seq/test/expected_values_for_PE3+50 screen.txt
repair_seq/test/expected_values_for_PE3+50_screen.txt
repair_seq/test/index_locations.yaml
repair_seq/test/read_set_details.txt
repair_seq/test/test_read_sets.py
repair_seq/test/targets/pPC1000_G6C_15/degenerate_deletions.txt
repair_seq/test/targets/pPC1000_G6C_15/degenerate_insertions.txt
repair_seq/test/targets/pPC1000_G6C_15/manifest.yaml
repair_seq/test/targets/pPC1000_G6C_15/pegrna_g6c_15.gb
repair_seq/test/targets/pPC1000_G6C_15/ppc1000.gb
repair_seq/test/targets/pPC1000_G6C_15/refs.fasta
repair_seq/test/targets/pPC1000_G6C_15/refs.fasta.fai
repair_seq/test/targets/pPC1000_G6C_15/refs.gff
repair_seq/visualize/__init__.py
repair_seq/visualize/clustermap.py
repair_seq/visualize/conversion_tracts.py
repair_seq/visualize/gene_significance.py
repair_seq/visualize/heatmap.py
repair_seq/visualize/outcome_diagrams.py
repair_seq/visualize/scatter.py
repair_seq/visualize/scratch.py
repair_seq/visualize/templated_insertions.py
repair_seq/visualize/volcano.py
repair_seq/visualize/interactive/UMAP.py
repair_seq/visualize/interactive/UMAP_hover.coffee
repair_seq/visualize/interactive/UMAP_hover.js
repair_seq/visualize/interactive/UMAP_menu.coffee
repair_seq/visualize/interactive/UMAP_menu.js
repair_seq/visualize/interactive/alphabetical.py
repair_seq/visualize/interactive/scatter_save_button.coffee
repair_seq/visualize/interactive/scatter_save_button.js
repair_seq/visualize/interactive/screen_menu.coffee
repair_seq/visualize/interactive/screen_menu.js
repair_seq/visualize/interactive/screen_range.coffee
repair_seq/visualize/interactive/screen_range.js
repair_seq/visualize/interactive/screen_scatter_selection.coffee
repair_seq/visualize/interactive/screen_scatter_selection.js
repair_seq/visualize/interactive/screen_search.coffee
repair_seq/visualize/interactive/screen_search.js
repair_seq/visualize/interactive/screen_significance_filter.coffee
repair_seq/visualize/interactive/screen_significance_filter.js