LICENSE
LICENSE.md
README.md
setup.cfg
setup.py
spectre/__init__.py
spectre/spectre.py
spectre/spectreCNV.py
spectre/spectreCNVPopulation.py
spectre/analysis/__init__.py
spectre/analysis/analysis.py
spectre/analysis/breakpoint_analysis.py
spectre/analysis/call_cnv_AF.py
spectre/analysis/call_cnv_coverage.py
spectre/analysis/cnv_metrics.py
spectre/analysis/cnv_post_processing.py
spectre/analysis/coverage_stats.py
spectre/analysis/snv_analysis.py
spectre/classes/__init__.py
spectre/classes/cnv_candidate.py
spectre/classes/loh_candidate.py
spectre/libs/__init__.py
spectre/libs/unidip/__init__.py
spectre/libs/unidip/dip.py
spectre/libs/unidip/unidip.py
spectre/plots/__init__.py
spectre/plots/plot.py
spectre/util/OSUtil.py
spectre/util/__init__.py
spectre/util/cnv_id.py
spectre/util/dataAnalyzer.py
spectre/util/logger.py
spectre/util/mosdepthReader.py
spectre/util/outputWriter.py
spectre/util/timing_dev.py
spectre/util/vcf_parser.py
spectre/util/metadata/__init__.py
spectre/util/metadata/metadataCollector.py
spectre_cnv.egg-info/PKG-INFO
spectre_cnv.egg-info/SOURCES.txt
spectre_cnv.egg-info/dependency_links.txt
spectre_cnv.egg-info/entry_points.txt
spectre_cnv.egg-info/requires.txt
spectre_cnv.egg-info/top_level.txt