Metadata-Version: 2.4
Name: cpgtools
Version: 2.0.5
Summary: Tools to analyze and visualize DNA methylation data
Author-email: Liguo Wang <wangliguo78@gmail.com>
Maintainer-email: Liguo Wang <wangliguo78@gmail.com>
License-Expression: MIT
Project-URL: Documentation, https://cpgtools.readthedocs.io/en/latest/index.html
Project-URL: Repository, https://github.com/liguowang/cpgtools.git
Keywords: DNA methylation,EPIC,450K,850K,935K,RRBS,WGBS
Classifier: Programming Language :: Python :: 3
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: POSIX
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.5
Description-Content-Type: text/markdown
License-File: LICENSE.txt
Requires-Dist: numpy
Requires-Dist: scipy
Requires-Dist: scikit-learn
Requires-Dist: weblogo
Requires-Dist: bx-python
Requires-Dist: pandas
Requires-Dist: umap-learn
Requires-Dist: fancyimpute
Requires-Dist: pycombat
Requires-Dist: matplotlib
Dynamic: license-file

## Install CpGtools using [pip](https://pip.pypa.io/en/stable/)

1. (Optional) Create Virtual Environments (Note: `venv` is available in Python 3.3 and later. You can also use [virtualenv](https://packaging.python.org/en/latest/key_projects/#virtualenv))

 `$ python3 -m venv my_env` (will create a directory called my_env)
 
 `$ source my_env/bin/activate`

2. Install CpGtools

 `$ pip install cpgtools`
 
 or
 
 `$ pip install git+https://github.com/liguowang/cpgtools.git`

3. Upgrade

 `$ pip install cpgtools --upgrade`

4. Uninstall

 `pip -y uninstall cpgtools`

## Documentation

https://cpgtools.readthedocs.io/en/latest/
