Metadata-Version: 2.1
Name: mutanno
Version: 0.4.7
Summary: Mutation Annotation Tool
Home-page: https://github.com/dbmi-bgm/mutanno
Author: CGAP team at Harvard Medical School
Author-email: daniel.minseok.kwon@gmail.com
License: MIT
Download-URL: https://github.com/dbmi-bgm/mutanno/archive/0.4.0.tar.gz
Keywords: genomics,bioinformatics
Platform: UNKNOWN
Classifier: Operating System :: OS Independent
Classifier: Topic :: Software Development :: Libraries
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Requires-Python: >=3.4
Description-Content-Type: text/markdown
Requires-Dist: pyfaidx (>=0.5.3.1)
Requires-Dist: pysam (>=0.11.2.2y7)
Requires-Dist: pytabix (>=0.0.2)
Requires-Dist: pyliftover (>=0.4)
Requires-Dist: xmltodict (>=0.12.0)
Requires-Dist: pyvcf (>=0.6.8)
Requires-Dist: tqdm (>=4.48.2)

# MutAnno
[![pypi version](https://img.shields.io/pypi/v/mutanno.svg)](https://pypi.org/project/mutanno/)
[![doc](https://readthedocs.org/projects/mutanno/badge/?version=latest)](https://mutanno.readthedocs.io/en/latest/)
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* github : https://github.com/dbmi-bgm/mutanno
* manual : https://mutanno.readthedocs.io/en/latest/

For more details, see MutAnno [**documentation**](http://mutanno.readthedocs.io/en/latest).

```
mutanno annot -vcf trio_test2.vcf \
    -out trio_test2.annot.vcf \
    -ds tests/datastructure_microannot_v1.0.json \
    -sourcefile sourcefile.tsv.gz \
    -split_multi_allelic_variant \
    -blocksize 10000
```



