LICENSE.txt
README.md
pyproject.toml
setup.cfg
origamipy/__init__.py
origamipy/_version.py
origamipy/biases.py
origamipy/conditions.py
origamipy/config_process.py
origamipy/datatypes.py
origamipy/decorrelate.py
origamipy/files.py
origamipy/mbar_wrapper.py
origamipy/nearest_neighbour.py
origamipy/outputs.py
origamipy/plotting.py
origamipy/remc.py
origamipy/us_process.py
origamipy/utility.py
origamipy.egg-info/PKG-INFO
origamipy.egg-info/SOURCES.txt
origamipy.egg-info/dependency_links.txt
origamipy.egg-info/requires.txt
origamipy.egg-info/top_level.txt
scripts/analysis/calc_1d_enum_means.py
scripts/analysis/calc_2d-remc_numfullyboundstaples.py
scripts/analysis/calc_2d_enum_means.py
scripts/analysis/calc_mwus_domain_occupancies.py
scripts/analysis/calc_mwus_numfullyboundstaples.py
scripts/analysis/calc_radius-of-gyration.py
scripts/analysis/calc_scaffold_rmsd.py
scripts/analysis/check_2d-remc_converged.py
scripts/analysis/check_remc_converged.py
scripts/analysis/perform_mwus_decorrelation.py
scripts/analysis/perform_mwus_mbar.py
scripts/plotting/plot_2d-remc_means.py
scripts/plotting/plot_barrier-vs-sysvar.py
scripts/plotting/plot_barrier-vs-temp.py
scripts/plotting/plot_combo-means.py
scripts/plotting/plot_conditions-lfes.py
scripts/plotting/plot_domain-frequencies.py
scripts/plotting/plot_domainstate-melting-temps.py
scripts/plotting/plot_lfes-rep-temps.py
scripts/plotting/plot_lfes-three.py
scripts/plotting/plot_lfes-two.py
scripts/plotting/plot_lfes.py
scripts/plotting/plot_means.py
scripts/plotting/plot_multi-lfes.py
scripts/plotting/plot_mwus_ops_series.py
scripts/plotting/plot_numfullyboundstaples-freqs.py
scripts/plotting/plot_ops_series.py
scripts/plotting/plot_remc_ops_series.py
scripts/plotting/plot_staplestates-means.py
scripts/plotting/plot_staplestates-melting-temps.py
scripts/sequtils/calc_average_energies.py
scripts/sequtils/calc_average_melting_point.py
scripts/sequtils/random_sequence.py
scripts/simutils/create_input_files.py
scripts/simutils/extract_config.py
scripts/simutils/extract_mwus_restart_configs.py
scripts/simutils/extract_remc_restart_configs.py
scripts/simutils/extract_serial_restart_configs.py
scripts/simutils/generate_initial_temp_range.py
scripts/simutils/generate_ptmc_stacks.py
scripts/simutils/generate_ptmc_temps.py
scripts/simutils/generate_ptmc_temps2.py
scripts/simutils/select_starting_configs.py
scripts/tikz/create_tikz_diagram.py