LICENSE
MANIFEST.in
README.md
pyproject.toml
src/pepseqpred/__init__.py
src/pepseqpred.egg-info/PKG-INFO
src/pepseqpred.egg-info/SOURCES.txt
src/pepseqpred.egg-info/dependency_links.txt
src/pepseqpred.egg-info/entry_points.txt
src/pepseqpred.egg-info/requires.txt
src/pepseqpred.egg-info/top_level.txt
src/pepseqpred/api/__init__.py
src/pepseqpred/api/predictor.py
src/pepseqpred/api/pretrainedregistry.py
src/pepseqpred/api/types.py
src/pepseqpred/api/pretrained_artifacts/flagship1-v1/ensemble_manifest.json
src/pepseqpred/api/pretrained_artifacts/flagship1-v1/fold_01.pt
src/pepseqpred/api/pretrained_artifacts/flagship1-v1/fold_02.pt
src/pepseqpred/api/pretrained_artifacts/flagship1-v1/fold_03.pt
src/pepseqpred/api/pretrained_artifacts/flagship1-v1/fold_04.pt
src/pepseqpred/api/pretrained_artifacts/flagship1-v1/fold_05.pt
src/pepseqpred/api/pretrained_artifacts/flagship2-v1/ensemble_manifest.json
src/pepseqpred/api/pretrained_artifacts/flagship2-v1/fold_01.pt
src/pepseqpred/api/pretrained_artifacts/flagship2-v1/fold_02.pt
src/pepseqpred/api/pretrained_artifacts/flagship2-v1/fold_03.pt
src/pepseqpred/api/pretrained_artifacts/flagship2-v1/fold_04.pt
src/pepseqpred/api/pretrained_artifacts/flagship2-v1/fold_05.pt
src/pepseqpred/apps/__init__.py
src/pepseqpred/apps/esm_cli.py
src/pepseqpred/apps/evaluate_ffnn_cli.py
src/pepseqpred/apps/labels_cli.py
src/pepseqpred/apps/prediction_cli.py
src/pepseqpred/apps/preprocess_cli.py
src/pepseqpred/apps/train_ffnn_cli.py
src/pepseqpred/apps/train_ffnn_optuna_cli.py
src/pepseqpred/core/__init__.py
src/pepseqpred/core/data/__init__.py
src/pepseqpred/core/data/proteindataset.py
src/pepseqpred/core/embeddings/__init__.py
src/pepseqpred/core/embeddings/esm2.py
src/pepseqpred/core/io/__init__.py
src/pepseqpred/core/io/keys.py
src/pepseqpred/core/io/logger.py
src/pepseqpred/core/io/read.py
src/pepseqpred/core/io/write.py
src/pepseqpred/core/labels/__init__.py
src/pepseqpred/core/labels/builder.py
src/pepseqpred/core/models/__init__.py
src/pepseqpred/core/models/base.py
src/pepseqpred/core/models/ffnn.py
src/pepseqpred/core/predict/__init__.py
src/pepseqpred/core/predict/artifacts.py
src/pepseqpred/core/predict/inference.py
src/pepseqpred/core/preprocess/__init__.py
src/pepseqpred/core/preprocess/pv1.py
src/pepseqpred/core/preprocess/zscores.py
src/pepseqpred/core/train/__init__.py
src/pepseqpred/core/train/ddp.py
src/pepseqpred/core/train/embedding.py
src/pepseqpred/core/train/metrics.py
src/pepseqpred/core/train/seed.py
src/pepseqpred/core/train/split.py
src/pepseqpred/core/train/threshold.py
src/pepseqpred/core/train/trainer.py
src/pepseqpred/core/train/weights.py