Metadata-Version: 2.1
Name: v1dd-physiology
Version: 0.1
Summary: SDK for volumetric multi-photon data of V1 DeepDive project
Home-page: https://github.com/AllenInstitute/v1dd_physiology.git
Author: Allen Institute
Author-email: junz@alleninstitute.org
License: UNKNOWN
Platform: any
Classifier: Programming Language :: Python
Classifier: Development Status :: 4 - Beta
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Requires-Python: >3.8
License-File: LICENSE
Requires-Dist: cython
Requires-Dist: scikit-image
Requires-Dist: pillow
Requires-Dist: pytest
Requires-Dist: opencv-python
Requires-Dist: tifffile
Requires-Dist: h5py
Requires-Dist: pandas
Requires-Dist: matplotlib
Requires-Dist: scipy
Requires-Dist: numpy
Requires-Dist: NeuroAnalysisTools

# v1dd_physiology  
Code for interacting with the Allen Institute V1 DeepDive dataset.  
  
special dependency:
* [NeuroAnalysisTools](https://github.com/zhuangjun1981/NeuroAnalysisTools)  

# Install
### Create environment
```
> conda create -n v1dd python=3
> conda activate v1dd ("source activate v1dd" for mac or linux)
```

### Install volume_imaging_2P_analysis
```
> pip install v1dd_physiology
```  
  
or  

```
> cd ..
> git clone https://github.com/AllenInstitute/v1dd_physiology.git
> cd v1dd_physiology
> python setup.py install
``` 
  
### Install Jupyter Notebook
```
> conda install jupyter
> python -m ipykernel install --user --name v1dd --display-name "Python3 (v1dd)"
```

