Metadata-Version: 2.1
Name: exoclasma-fastq
Version: 0.9.0
Summary: Different file formats to FastQ, part of ExoClasma Suite
Project-URL: Homepage, https://github.com/regnveig/exoclasma-fastq
Project-URL: Bug Tracker, https://github.com/regnveig/exoclasma-fastq/issues
Author-email: Emil Viesná <regnveig@yandex.ru>, Minja Fishman <minja-f@yandex.ru>
License-File: LICENSE
Keywords: bioinformatics,conversion,fastq,juicer,sra
Classifier: Development Status :: 3 - Alpha
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3.10
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.10
Requires-Dist: biopython
Description-Content-Type: text/markdown

# exoclasma-fastq

## Description

exoclasma-fastq is a tool for conversion different types of files to Illumina-like FastQ, a part of upcoming ExoClasma Suite.

Features:

- Convert [Juicer](https://github.com/aidenlab/juicer) `merged_nodups.txt` file to FastQ, keeping its annotation
- Convert SRA to compressed FastQ via [fastq-dump](https://github.com/ncbi/sra-tools).

**This is a pre-release. Use it at your own risk!**

## Installation

```bash
python3 -m pip install exoclasma-fastq
```

## Command-line dependencies

- [fastq-dump](https://github.com/ncbi/sra-tools)
