Analysis Parameters Guide
=========================

.. seealso::

   - :doc:`presets` - Preset management for parameter configurations
   - :doc:`pdbfixing` - PDB structure fixing parameters and methods
   - :class:`hbat.constants.parameters.ParametersDefault` - API reference for default parameter values
   - :class:`hbat.constants.parameters.AnalysisParameters` - API reference for parameter class
