Metadata-Version: 1.1
Name: pergenie
Version: 0.1.3
Summary: perGENIE is a Web/CUI application for personal genome interpretation.
Home-page: https://github.com/perGENIE/pergenie
Author: Kensuke Numakura
Author-email: knmkr3gma+pip@gmail.com
License: GNU AGPLv3
Description: `perGENIE <http://pergenie.org/>`_ is a Web/CUI application for
        **personal genome interpretation**. This repository contains
        the core utils of perGENIE, such as ``Disease Risk Report``.
        
        |pypi| |pypi_license|
        
        ================================
        Quick Start (For non-developers)
        ================================
        
        Without installation, just download this repository and run:
        
        .. code-block:: bash
        
            $ python ./pergenie [command] [options]
        
        ==============
        Usage Examples
        ==============
        
        To run ``Disease Risk Report``:
        
        .. code-block:: bash
        
            $ python ./pergenie riskreport -I example/vcf_whole_genome.vcf \
                                           -F vcf_whole_genome \
                                           -P Asian
        
        ===============
        For developpers
        ===============
        
        --------------
        How to Install
        --------------
        
        If you are familier with `pip <https://pypi.python.org/pypi/pip>`_:
        
        .. code-block:: bash
        
            $ pip install pergenie
        
        Or clone this repository, then, install by setup script:
        
        .. code-block:: bash
        
            $ python setup.py install
        
        ---------------
        How to run test
        ---------------
        
        .. code-block:: bash
        
            $ python setup.py test
        
        =======
        License
        =======
        
        Copyright (c) 2012,2013,2014,2015 perGENIE Team <knmkr3gma[at]gmail.com>
        
        perGENIE is licensed under the GNU AGPLv3.0.
        
        |agplv3|
        
        
        .. |agplv3| image:: http://www.gnu.org/graphics/agplv3-88x31.png
           :alt: AGPLv3
        
        .. |pypi| image:: https://img.shields.io/pypi/v/pergenie.svg
           :target: https://pypi.python.org/pypi/pergenie
           :alt: Latest version on PyPI
        
        .. |pypi_license| image:: https://img.shields.io/pypi/l/pergenie.svg
           :target: https://pypi.python.org/pypi/pergenie
           :alt: License on PyPI
        
        =========
        CHANGELOG
        =========
        
        - 0.1.0
          - Initial release
        - 0.1.1
          - Update readme
        - 0.1.2
          - Change license to AGPLv3
        - 0.1.3
          - Rewrite README.md to .rst
        
Keywords: bioinformatics,personal genome
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Education
Classifier: Intended Audience :: End Users/Desktop
Classifier: Intended Audience :: Healthcare Industry
Classifier: Intended Audience :: Information Technology
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Natural Language :: Japanese
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Unix
Classifier: Programming Language :: Python :: 2.6
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 2 :: Only
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
