Metadata-Version: 2.1
Name: lrplots
Version: 0.6.0
Summary: Plot collection for Long Read Sequencing
Home-page: https://github.com/ahcm/longread_plots
Author: Andy Hauser
Author-email: Andreas.Hauser@LMU.de
License: LICENSE
Description: # longread_plots
        A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.
        # Dependencies
        ```bash
        pip install --user --upgrade pandas seaborn
        ```
        
        Note that matplot lib >= 3.0.0 is needed.
        Python >= 3.5 is therfore recommended, otherwise plots might be corrupted.
        
        # Installation
        
        From PyPi:
        ```bash
        pip3 install --user lrplots
        ```
        
        From the release tar.gz:
        ```bash
        python3 setup.py install --user
        ```
        
        
        # Usage
        With the pip3 installation it should be in your PATH and you should be able to just call:
        ```bash
        lrplot example.fastq
        ```
        
        If the command can't be found, pip3 installed it in a path that is not in your PATH variable.
        You can then find it with:
        ```bash
        find ~ -name lrplot
        ```
        or
        ```bash
        find /usr/local -name lrplot
        ```
        Then either add the containing directory to your PATH or just use the full path.
        
        You can also call it like a script with python3 (or whatever your python3 is called):
        ```bash
        python3 bin/lrplots example.fastq
        ```
        
        # Output
        
        <p align="center">
        <a name="screenshot">
        <img src="https://raw.githubusercontent.com/ahcm/longread_plots/master/doc/images/20180416_1422_EWolf_9948_susscrofa-albacore-2.2.5-FLO-PRO001-SQK-LSK109.fastq-lrplots.png" width="800px">
          </a>
        </p>
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
