numpy
pandas
torch
scipy
tqdm
scikit-learn
matplotlib
anndata

[dev]
scanpy[leiden]
plotnine
pyro-ppl
scikit-bio>=0.6
jupyterlab
ipykernel
ipywidgets
pytest
pytest-cov
black
ruff
setuptools-scm

[docs]
sphinx
jupyterlab
sphinx-book-theme
sphinxcontrib-bibtex
myst-nb
myst-sphinx-gallery
setuptools-scm

[gp]
gpytorch
linear-operator
finufft

[sdata]
spatialdata
spatialdata-io
spatialdata-plot
