.editorconfig
.gitignore
.travis.yml
LICENSE
README.md
pyproject.toml
pytest.ini
setup.py
tox.ini
.github/ISSUE_TEMPLATE.md
.vscode/settings.json
dpks/__init__.py
dpks/annotate_proteins.py
dpks/classification.py
dpks/cli.py
dpks/correction.py
dpks/differential_testing.py
dpks/dpks.py
dpks/feature_selection.py
dpks/imputer.py
dpks/interpretation.py
dpks/normalization.py
dpks/param_search.py
dpks/parsers.py
dpks/plot.py
dpks/quant_matrix.py
dpks/quantification.py
dpks/scaling.py
dpks.egg-info/PKG-INFO
dpks.egg-info/SOURCES.txt
dpks.egg-info/dependency_links.txt
dpks.egg-info/requires.txt
dpks.egg-info/top_level.txt
notebooks/classifier.ipynb
notebooks/differential_expression.ipynb
notebooks/quant_matrix.ipynb
notebooks/rt_sliding_window_normalization.ipynb
tests/__init__.py
tests/conftest.py
tests/test_differential_testing.py
tests/test_dpks.py
tests/test_feature_ranking.py
tests/test_imputer.py
tests/test_interpret.py
tests/test_normalization.py
tests/test_plot.py
tests/test_quant_matrix.py
tests/test_quantification.py
tests/test_scaling.py
tests/input_files/data_sepsis.tsv
tests/input_files/de_design_matrix.tsv
tests/input_files/de_matrix.tsv
tests/input_files/design_matrix.tsv
tests/input_files/design_sepsis.tsv
tests/input_files/minimal_design_matrix.tsv
tests/input_files/minimal_matrix.tsv
tests/input_files/minimal_matrix_missing.tsv
tests/input_files/pyprophet_baseline_matrix.tsv