torch
scanpy
matplotlib
numpy
seaborn
diskcache
appdirs
xarray
requests
zarr
pathlibfs

[dev]
pre-commit
pytest
coverage
polyptich
black
pylint
jupytext
mkdocs
mkdocs-material
mkdocstrings[python]
mkdocs-jupyter
mike
cairosvg
pillow
mkdocs-awesome-pages-plugin
setuptools_scm
Cython

[full]
chromatinhd[sam]

[sam]
pysam

[test]
pytest
ruff
