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pymip/__init__.py
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pymip.egg-info/top_level.txt
pymip/api/__init__.py
pymip/api/analysis.py
pymip/api/archive.py
pymip/api/config.py
pymip/api/genelist.py
pymip/api/pedigree.py
pymip/api/sampleinfo.py
pymip/api/scout.py
pymip/archive/__init__.py
pymip/archive/core.py
pymip/archive/prepare.py
pymip/cli/__init__.py
pymip/cli/archive.py
pymip/cli/base.py
pymip/cli/log.py
pymip/cli/prepare.py
tests/conftest.py
tests/test_utils.py
tests/api/test_api_analysis.py
tests/api/test_api_archive.py
tests/api/test_api_config.py
tests/api/test_api_genelist.py
tests/api/test_api_pedigree.py
tests/api/test_api_sampleinfo.py
tests/api/test_api_scout.py
tests/archive/test_archive_prepare.py
tests/fixtures/demo_config.yaml
tests/fixtures/sample_config.yaml
tests/fixtures/.clinical/config.yaml
tests/fixtures/cust001/.DS_Store
tests/fixtures/cust001/15035-miptest/.DS_Store
tests/fixtures/cust001/15035-miptest/analysis/.DS_Store
tests/fixtures/cust001/15035-miptest/analysis/exomes/.DS_Store
tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/.DS_Store
tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/15035-miptest.fam
tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/15035-miptest_qcmetrics.yaml
tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/qc_pedigree.yaml
tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/analysisrunstatus/.DS_Store
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tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/analysisrunstatus/info/AnalysisRunStatus_15035-miptest.0.stdout.txt
tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/bwa/.DS_Store
tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/.DS_Store
tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_BOTH.bcf
tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_BOTH.vcf
tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_vt_vep_parsed_snpeff_ranked_BOTH.selected.vcf
tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_vt_vep_parsed_snpeff_ranked_BOTH.vcf
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tests/fixtures/cust001/15035-miptest/analysis/exomes/15035-miptest/qccollect/info/QCCollect_15035-miptest.0.stdout.txt
tests/fixtures/cust001/15035-miptest/analysis/exomes/ADM997A2-miptest/.DS_Store
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tests/fixtures/cust001/15035-miptest/analysis/exomes/ADM997A2-miptest/fastqc/1_150421_H2Y57BCXX_ADM997A2-miptest_GTCTGTCA_1_fastqc/fastqc_data.txt
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tests/fixtures/cust001/15035-miptest/analysis/exomes/ADM997A2-miptest/fastqc/2_150421_H2Y57BCXX_ADM997A2-miptest_GTCTGTCA_2_fastqc/fastqc_report.html
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tests/fixtures/cust001/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/coveragereport/ADM997A3-miptest_lanes_12_sorted_merged_smd_rreal_brecal_chanjoSexCheck.log
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tests/fixtures/cust001/15035-miptest/analysis/exomes/ADM997A3-miptest/fastqc/1_150421_H2Y57BCXX_ADM997A3-miptest_CTAAGGTC_1_fastqc/fastqc_report.html
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tests/fixtures/cust001/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/coveragereport/ADM997A4-miptest_lanes_12_sorted_merged_smd_rreal_brecal_chanjoSexCheck.log
tests/fixtures/cust001/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/coveragereport/ADM997A4-miptest_lanes_12_sorted_merged_smd_rreal_brecal_coverage.bed
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tests/fixtures/mip/sampleinfo/error_qc_sampleInfo.yaml
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tests/fixtures/references/cust000-Clinical_master_list.txt
tests/fixtures/references/cust002-AD.txt
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