Running on: compute-0-1.local
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/ADM997A4-miptest.150421_H2Y57BCXX_CGACACAC.lane1_sorted.cram
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/ADM997A4-miptest.150421_H2Y57BCXX_CGACACAC.lane2_sorted.cram
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/gatk/ADM997A4-miptest_lanes_12_sorted_merged_smd_rreal_brecal.bam
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/gatk/ADM997A2-miptest_lanes_12_sorted_merged_smd_rreal_brecal.bam
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/ADM997A2-miptest.150421_H2Y57BCXX_GTCTGTCA.lane1_sorted.cram
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/ADM997A2-miptest.150421_H2Y57BCXX_GTCTGTCA.lane2_sorted.cram
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_BOTH.bcf
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/15035-miptest_qcmetrics.yaml
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_vt_vep_parsed_snpeff_ranked_BOTH.vcf
Found file /mnt/hds/proj/bioinfo/develop/references/rank_model_cmms_v1.12.ini
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_vt_vep_parsed_snpeff_ranked_BOTH.selected.vcf
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/exomes/15035-miptest/15035-miptest_pedigree.txt
Found file /mnt/hds/proj/bioinfo/develop/references/Homo_sapiens.GRCh37.d5.fasta
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_vt_vep_parsed_snpeff_ranked_BOTH.vcf
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_vt_vep_parsed_snpeff_ranked_BOTH.selected.vcf
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_BOTH.vcf
Found file /mnt/hds/proj/bioinfo/develop/references/cust000-Research.txt
Found file /mnt/hds/proj/bioinfo/develop/references/cust000-Clinical_master_list.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/qc_pedigree.yaml
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/gatk/ADM997A3-miptest_lanes_12_sorted_merged_smd_rreal_brecal.bam
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/ADM997A3-miptest.150421_H2Y57BCXX_CTAAGGTC.lane2_sorted.cram
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/ADM997A3-miptest.150421_H2Y57BCXX_CTAAGGTC.lane1_sorted.cram
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/coveragereport/ADM997A4-miptest_lanes_12_sorted_merged_smd_rreal_brecal_CalculateHsMetrics
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/gatk/varianteval/ADM997A4-miptest_lanes_12_sorted_smd_rreal_brecal_gvcf_vrecal_BOTH_exome.vcf.varianteval
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/info//BwaMem_ADM997A4-miptest.0.stderr.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/info//BwaMem_ADM997A4-miptest.1.stderr.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/gatk/varianteval/ADM997A4-miptest_lanes_12_sorted_smd_rreal_brecal_gvcf_vrecal_BOTH.vcf.varianteval
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/coveragereport/ADM997A4-miptest_lanes_12_sorted_merged_smd_rreal_brecal.sexcheck
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/coveragereport/ADM997A4-miptest_lanes_12_sorted_merged_smd_rreal_brecal_chanjoSexCheck.log
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/coveragereport/ADM997A4-miptest_lanes_12_sorted_merged_smd_rreal_brecal.alignment_summary_metrics
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/ADM997A4-miptest_lanes_12_sorted_merged_smd_metric
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/fastqc/2_150421_H2Y57BCXX_ADM997A4-miptest_CGACACAC_2_fastqc/fastqc_data.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/fastqc/2_150421_H2Y57BCXX_ADM997A4-miptest_CGACACAC_1_fastqc/fastqc_data.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/fastqc/1_150421_H2Y57BCXX_ADM997A4-miptest_CGACACAC_1_fastqc/fastqc_data.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/fastqc/1_150421_H2Y57BCXX_ADM997A4-miptest_CGACACAC_2_fastqc/fastqc_data.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/ADM997A4-miptest.150421_H2Y57BCXX_CGACACAC.lane2_sorted.stats
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A4-miptest/bwa/ADM997A4-miptest.150421_H2Y57BCXX_CGACACAC.lane1_sorted.stats
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/gatk/varianteval/ADM997A2-miptest_lanes_12_sorted_smd_rreal_brecal_gvcf_vrecal_BOTH_exome.vcf.varianteval
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/info//BwaMem_ADM997A2-miptest.0.stderr.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/info//BwaMem_ADM997A2-miptest.1.stderr.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/coveragereport/ADM997A2-miptest_lanes_12_sorted_merged_smd_rreal_brecal_CalculateHsMetrics
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/coveragereport/ADM997A2-miptest_lanes_12_sorted_merged_smd_rreal_brecal.alignment_summary_metrics
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/ADM997A2-miptest_lanes_12_sorted_merged_smd_metric
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/ADM997A2-miptest.150421_H2Y57BCXX_GTCTGTCA.lane1_sorted.stats
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/ADM997A2-miptest.150421_H2Y57BCXX_GTCTGTCA.lane2_sorted.stats
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/fastqc/2_150421_H2Y57BCXX_ADM997A2-miptest_GTCTGTCA_1_fastqc/fastqc_data.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/fastqc/1_150421_H2Y57BCXX_ADM997A2-miptest_GTCTGTCA_2_fastqc/fastqc_data.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/fastqc/2_150421_H2Y57BCXX_ADM997A2-miptest_GTCTGTCA_2_fastqc/fastqc_data.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/fastqc/1_150421_H2Y57BCXX_ADM997A2-miptest_GTCTGTCA_1_fastqc/fastqc_data.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/gatk/varianteval/ADM997A2-miptest_lanes_12_sorted_smd_rreal_brecal_gvcf_vrecal_BOTH.vcf.varianteval
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/coveragereport/ADM997A2-miptest_lanes_12_sorted_merged_smd_rreal_brecal.sexcheck
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A2-miptest/bwa/coveragereport/ADM997A2-miptest_lanes_12_sorted_merged_smd_rreal_brecal_chanjoSexCheck.log
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_vt_vep_parsed_snpeff_BOTH_1.selected.vcf
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/15035-miptest_qcmetrics.yaml
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/samplecheck/15035-miptest.mibs
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/samplecheck/15035-miptest.het
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/info//VariantAnnotationBlock_15035-miptest.0.stderr.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_vt_vep_parsed_snpeff_ranked_BOTH.selected.vcf
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_BOTH.vcf
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_vt_vep_parsed_BOTH_1.vcf
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/info//VariantAnnotationBlock_15035-miptest.0.stderr.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/samplecheck/15035-miptest.sexcheck
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/15035-miptest/bwa/gatk/15035-miptest_sorted_smd_rreal_brecal_gvcf_vrecal_vt_vep_BOTH_1.vcf_summary.html
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/coveragereport/ADM997A3-miptest_lanes_12_sorted_merged_smd_rreal_brecal.sexcheck
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/coveragereport/ADM997A3-miptest_lanes_12_sorted_merged_smd_rreal_brecal_chanjoSexCheck.log
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/gatk/varianteval/ADM997A3-miptest_lanes_12_sorted_smd_rreal_brecal_gvcf_vrecal_BOTH.vcf.varianteval
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/ADM997A3-miptest.150421_H2Y57BCXX_CTAAGGTC.lane1_sorted.stats
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/ADM997A3-miptest.150421_H2Y57BCXX_CTAAGGTC.lane2_sorted.stats
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/fastqc/1_150421_H2Y57BCXX_ADM997A3-miptest_CTAAGGTC_2_fastqc/fastqc_data.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/fastqc/1_150421_H2Y57BCXX_ADM997A3-miptest_CTAAGGTC_1_fastqc/fastqc_data.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/fastqc/2_150421_H2Y57BCXX_ADM997A3-miptest_CTAAGGTC_1_fastqc/fastqc_data.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/fastqc/2_150421_H2Y57BCXX_ADM997A3-miptest_CTAAGGTC_2_fastqc/fastqc_data.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/ADM997A3-miptest_lanes_12_sorted_merged_smd_metric
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/coveragereport/ADM997A3-miptest_lanes_12_sorted_merged_smd_rreal_brecal.alignment_summary_metrics
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/coveragereport/ADM997A3-miptest_lanes_12_sorted_merged_smd_rreal_brecal_CalculateHsMetrics
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/info//BwaMem_ADM997A3-miptest.1.stderr.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/info//BwaMem_ADM997A3-miptest.0.stderr.txt
Found file /mnt/hds/proj/bioinfo/develop/cust000/15035-miptest/analysis/exomes/ADM997A3-miptest/bwa/gatk/varianteval/ADM997A3-miptest_lanes_12_sorted_smd_rreal_brecal_gvcf_vrecal_BOTH_exome.vcf.varianteval
