.bumpversion.cfg
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup_scm_example.py
version.py
docs/INSTALL.md
docs/LLM_API_SETUP.md
docs/RELEASE_NOTES.md
docs/RELEASE_WORKFLOW.md
docs/WEB_API_DEPLOYMENT.md
examples/README.md
examples/db_config_example.py
extools/msa/README.md
results/.gitkeep
results/README.md
results/cache/.gitkeep
results/sample/.gitkeep
rxnrecer/__init__.py
rxnrecer.egg-info/PKG-INFO
rxnrecer.egg-info/SOURCES.txt
rxnrecer.egg-info/dependency_links.txt
rxnrecer.egg-info/entry_points.txt
rxnrecer.egg-info/requires.txt
rxnrecer.egg-info/top_level.txt
rxnrecer/cli/__init__.py
rxnrecer/cli/cache.py
rxnrecer/cli/download.py
rxnrecer/cli/genmolsvg.py
rxnrecer/cli/predict.py
rxnrecer/config/__init__.py
rxnrecer/config/config.py
rxnrecer/lib/__init__.py
rxnrecer/lib/datasource/rhea.py
rxnrecer/lib/datasource/uniprot.py
rxnrecer/lib/embedding/esm_embedding.py
rxnrecer/lib/embedding/t5_embedding.py
rxnrecer/lib/embedding/unirep_embedding.py
rxnrecer/lib/evaluation/__init__.py
rxnrecer/lib/evaluation/cross_validation.py
rxnrecer/lib/evaluation/eva.py
rxnrecer/lib/llm/chat.py
rxnrecer/lib/llm/prompt.py
rxnrecer/lib/llm/qa.py
rxnrecer/lib/ml/__init__.py
rxnrecer/lib/ml/dataset_utils.py
rxnrecer/lib/ml/mlcommon.py
rxnrecer/lib/ml/mlpredict.py
rxnrecer/lib/model/mactive.py
rxnrecer/lib/rxn/Molecule.py
rxnrecer/lib/rxn/Reaction.py
rxnrecer/lib/rxn/process_all_reactions.py
rxnrecer/lib/smi/simi_caculator.py
rxnrecer/lib/structure/__init__.py
rxnrecer/lib/structure/esmfold_batch.py
rxnrecer/lib/structure/pdb_utils.py
rxnrecer/lib/structure/prostt5_embedding.py
rxnrecer/lib/structure/tdi.py
rxnrecer/models/__init__.py
rxnrecer/models/bgru_model.py
rxnrecer/models/esm_embedding.py
rxnrecer/utils/__init__.py
rxnrecer/utils/bio_utils.py
rxnrecer/utils/ec_utils.py
rxnrecer/utils/evidence_utils.py
rxnrecer/utils/file_utils.py
rxnrecer/utils/format_utils.py
rxnrecer/utils/rhea_utils.py
rxnrecer/utils/uniprot_utils.py